PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00953g04019.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 500aa    MW: 56495.9 Da    PI: 10.1573
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00953g04019.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF633.2e-201863449
                              -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              + +sn  vtfskRr g++KKA+EL++LC++e+a+i+fs+  k++ +
  Niben101Scf00953g04019.1 18 SKESNLLVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPGHKVFSF 63
                              6678999********************************9999877 PP
2SRF-TF65.55.4e-21211258249
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                               +ie k   qvtfskRr g++KKA+EL++LC++e+a+i+fs+  k++ +
  Niben101Scf00953g04019.1 211 KIEVKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPARKVFSF 258
                               58888899**********************************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.3E-29766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.273767IPR002100Transcription factor, MADS-box
CDDcd002652.54E-29877No hitNo description
SuperFamilySSF554556.02E-25882IPR002100Transcription factor, MADS-box
PfamPF003194.7E-221763IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-30202261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.703202262IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-26203283IPR002100Transcription factor, MADS-box
CDDcd002657.63E-31203276No hitNo description
PRINTSPR004041.0E-16204224IPR002100Transcription factor, MADS-box
PfamPF003193.8E-23211258IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-16224239IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-16239260IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MARKMSKGRQ KIQMTKMSKE SNLLVTFSKR RSGLFKKASE LCTLCGVEIA IIVFSPGHKV  60
FSFGHPNVES IIDRFLTRNI PSSANSSSTT CQLVEAHRNA NVRELNKQLM EILNQLEFEK  120
KHEVEIVKIN KAKIGKNWWE RPVNELGQAE LEQLKLGMEE LKISVTKQMQ KIFIESSNTP  180
AFFLGASSSN GGQAAMAKKP SIGRQKIKIA KIEVKNHLQV TFSKRRSGLF KKASELCTLC  240
GVEIAIIVFS PARKVFSFGH PNVESIVDRF LSRNHNPVSN SSLHLVEAHR NASVRELNLQ  300
LTQILAELEV EKKRGESFDQ MRKTSESQYW WEAPIGKLGL HELEQLKESM DVLKKNVTNQ  360
ASKFMVETTA NSSSYFGVNG NEIFDIKPAR NMILAELEVE KKRGESFDQM RKTSESQYWW  420
EAPIGKLGLH ELEQLKESMD VLKKNVTNQA SKFMVETTAN SSSYFGVNGN EIFDIKPARN  480
MVASNNLHNH NFGFGSAGFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A3e-158288186Myocyte-specific enhancer factor 2A
3kov_B3e-158288186Myocyte-specific enhancer factor 2A
3kov_I3e-158288186Myocyte-specific enhancer factor 2A
3kov_J3e-158288186Myocyte-specific enhancer factor 2A
3p57_A3e-158288186Myocyte-specific enhancer factor 2A
3p57_B3e-158288186Myocyte-specific enhancer factor 2A
3p57_C3e-158288186Myocyte-specific enhancer factor 2A
3p57_D3e-158288186Myocyte-specific enhancer factor 2A
3p57_I3e-158288186Myocyte-specific enhancer factor 2A
3p57_J3e-158288186Myocyte-specific enhancer factor 2A
5f28_A4e-158288187MEF2C
5f28_B4e-158288187MEF2C
5f28_C4e-158288187MEF2C
5f28_D4e-158288187MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016448849.11e-131PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK22e-59AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A2H5P9P21e-166A0A2H5P9P2_CITUN; Uncharacterized protein
STRINGXP_009761267.11e-129(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-61AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]