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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00944g04003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 251aa MW: 29202.7 Da PI: 4.8135 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103.4 | 2.9e-32 | 10 | 105 | 1 | 96 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrF P+deelv++yL +k++++++ ++ e+d++++ePw+Lp +k +++ewyfFs rd+ky+ g r+nrat sgyWka Niben101Scf00944g04003.1 10 LPPGFRFCPSDEELVCHYLFNKITNEEIIK-GTLVEIDLHTCEPWQLPDLAKLNSSEWYFFSFRDRKYTIGFRANRATISGYWKA 93 79*************************766.78***************77777889***************************** PP NAM 86 tgkdkevlsk.k 96 tgkd++vl+ + Niben101Scf00944g04003.1 94 TGKDRTVLDPcT 105 *******99742 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-37 | 8 | 119 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.236 | 10 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-16 | 11 | 105 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MDLREIGATL PPGFRFCPSD EELVCHYLFN KITNEEIIKG TLVEIDLHTC EPWQLPDLAK 60 LNSSEWYFFS FRDRKYTIGF RANRATISGY WKATGKDRTV LDPCTRATED WVLCRVFHKT 120 KCENNNNCTN NLSPENMYEA AVTSPKLYKY SLNYDINNQD PPYQSQNSNT IHHHLFDLLV 180 KNHLQLSHQE TNEVSKDETT VNLSKCSQEV DQYGLMFDMD FEVPCLQDGV HSSLEDMKFD 240 DENSMVFHLN C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-28 | 10 | 100 | 15 | 105 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009801114.1 | 1e-158 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like | ||||
Refseq | XP_016485618.1 | 1e-158 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like | ||||
TrEMBL | A0A1S4B9Z4 | 1e-157 | A0A1S4B9Z4_TOBAC; protein CUP-SHAPED COTYLEDON 3-like | ||||
TrEMBL | A0A1U7YPF4 | 1e-157 | A0A1U7YPF4_NICSY; protein CUP-SHAPED COTYLEDON 3-like | ||||
STRING | XP_009801114.1 | 1e-158 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1882 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.2 | 2e-61 | NAC domain containing protein 74 |