PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00941g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 154aa MW: 17451.3 Da PI: 5.5872 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.3 | 7.7e-18 | 22 | 65 | 1 | 48 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 ++y+GVr+++ +gr++AeIr p++ r+r++lg+f+taeeAa a++ Niben101Scf00941g00007.1 22 TKYHGVRRRP-WGRYAAEIRNPNT---RQRHWLGTFDTAEEAALAYDI 65 69********.**********944...5******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.49E-27 | 22 | 80 | No hit | No description |
Pfam | PF00847 | 5.9E-12 | 22 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-28 | 23 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-26 | 23 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-18 | 23 | 81 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.574 | 23 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-9 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-9 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MENILPQLHV RNLGRRSSRH STKYHGVRRR PWGRYAAEIR NPNTRQRHWL GTFDTAEEAA 60 LAYDISSIAF CGIKNARTNF VYPFMSFSSS SSQPPPPPPP PPPPPLLSTP ELEVIENEED 120 DNDNDNDNDD DESLVIASIL QSFRHSNTLD KLAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-15 | 14 | 72 | 5 | 64 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates gene expression patterns in meristems and thus modulates organ development. Required for correct embryo patterning and cotyledon organogenesis. Modulates auxin signaling pathway in early embryos. Involved in the cytokinin signaling pathway that promotes shoot regeneration. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11752375, ECO:0000269|PubMed:12615942, ECO:0000269|PubMed:17376809}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinins. {ECO:0000269|PubMed:11752375}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009781053.1 | 1e-72 | PREDICTED: ethylene-responsive transcription factor LEP-like | ||||
Swissprot | Q9SAD4 | 4e-25 | ESR1_ARATH; Ethylene-responsive transcription factor ESR1 | ||||
TrEMBL | A0A1U7WR45 | 3e-71 | A0A1U7WR45_NICSY; ethylene-responsive transcription factor LEP-like | ||||
STRING | XP_009781053.1 | 5e-72 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 1e-26 | ERF family protein |
Publications ? help Back to Top | |||
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