PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00905g09006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 431aa    MW: 50094.3 Da    PI: 8.5601
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00905g09006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.73.2e-111896998
                              HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                        B3  9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                                +k++ l +p  f+ ++  g++   +++  +  +  ++W vk+  ++++    +++GW +F+++++L+ gD ++F+++g++ f   
  Niben101Scf00905g09006.1 18 PGFKHA-LKIPTGFL-KYlkGYD---HIEHAILRRGCKQWWVKV--NGYR----FEAGWADFAQQHDLQLGDLLIFRHEGNMVF--E 91
                              445555.99999999.6655444...45677778888*******..6665....************************999999..7 PP

                              EEEE- CS
                        B3 94 vkvfr 98
                              v +f+
  Niben101Scf00905g09006.1 92 VIIFD 96
                              77776 PP
2B350.63.4e-16146227489
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                +++s++lk+g +++p +fa+++g+  + + +l+++de+ rsW++kl    +  ++++++ W +F  +n+Lk+gD ++F+++ + 
  Niben101Scf00905g09006.1 146 CTVRSYYLKKGYMRVPSQFASKNGLTYK-KCDLIIRDERQRSWNLKL--YTSCHHVYIGGRWAKFRAENDLKVGDRIMFEVVTT- 226
                               5678*******************88754.459***************..999999*************************7753. PP

                               E CS
                        B3  89 e 89 
                               +
  Niben101Scf00905g09006.1 227 G 227
                               3 PP
3B347.14.3e-15334420595
                               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               +++++ l+ + l+lp +fa ++g+++ ++ +l+++de+ rsW++ l  r  + ++ +++GW++F + + LkegD ++F+++  ++
  Niben101Scf00905g09006.1 334 TIRPYCLAYSYLILPTQFALTNGLIN-KKYDLIIRDEWQRSWNLML--RPFGTSVCIRGGWSKFRDTHCLKEGDQIMFEVVT-DG 414
                               56788899999***********9995.668****************..*******************************876.56 PP

                               E..EEE CS
                        B3  90 felvvk 95 
                               +++v k
  Niben101Scf00905g09006.1 415 TKPVWK 420
                               656655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-186100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-189100IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.969998IPR003340B3 DNA binding domain
CDDcd100172.22E-121096No hitNo description
SMARTSM010193.8E-91298IPR003340B3 DNA binding domain
PfamPF023621.7E-72096IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-15142234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-16143236IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.646143237IPR003340B3 DNA binding domain
SMARTSM010195.2E-9144238IPR003340B3 DNA binding domain
PfamPF023621.5E-14147229IPR003340B3 DNA binding domain
CDDcd100174.04E-12149222No hitNo description
Gene3DG3DSA:2.40.330.101.2E-15326421IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.61E-17326422IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.335330424IPR003340B3 DNA binding domain
SMARTSM010192.0E-12331425IPR003340B3 DNA binding domain
PfamPF023626.2E-13334420IPR003340B3 DNA binding domain
CDDcd100173.81E-12345418No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MKEKVRPVKP HFFKPIQPGF KHALKIPTGF LKYLKGYDHI EHAILRRGCK QWWVKVNGYR  60
FEAGWADFAQ QHDLQLGDLL IFRHEGNMVF EVIIFDSSHC DREYAEYLLE EEDIVEEACK  120
KFKFKDGFPH AEAATHNPFG QSRFECTVRS YYLKKGYMRV PSQFASKNGL TYKKCDLIIR  180
DERQRSWNLK LYTSCHHVYI GGRWAKFRAE NDLKVGDRIM FEVVTTGERP IWKFHVKANP  240
SIKSSIKAFP YAEAASCKPF GHSHLDSGHC NREYAEYLQD KEDEEEKAAS DAVEGTFKKF  300
GLKDEPNPSV KSSSKAFPHV EDAIHKDVGH FVCTIRPYCL AYSYLILPTQ FALTNGLINK  360
KYDLIIRDEW QRSWNLMLRP FGTSVCIRGG WSKFRDTHCL KEGDQIMFEV VTDGTKPVWK  420
FHGKISGECE N
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019261617.10.0PREDICTED: B3 domain-containing protein REM5-like
TrEMBLA0A1U7VZU30.0A0A1U7VZU3_NICSY; B3 domain-containing protein REM5-like isoform X1
STRINGXP_009770481.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.12e-37B3 family protein