PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00887g02002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 478aa    MW: 52086 Da    PI: 5.0151
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00887g02002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.8e-1355109147
                               TSSS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.........tWktIartmgkgRtlkqcksrwqky 47 
                               r +WT+eE++++v+a k++G              +Ia+++g ++t+ q++s+ qk+
  Niben101Scf00887g02002.1  55 REKWTEEEHQRFVEALKLYGRAwrqiegecgIRLLIAEHVG-TKTAIQIRSHAQKF 109
                               789*****************778888888888888888888.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.56E-1449113IPR009057Homeodomain-like
PROSITE profilePS5129417.40350114IPR017930Myb domain
TIGRFAMsTIGR015579.7E-1353112IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.0E-754105IPR009057Homeodomain-like
SMARTSM007171.0E-754112IPR001005SANT/Myb domain
PfamPF002494.8E-65581IPR001005SANT/Myb domain
CDDcd001672.96E-857110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MVAEALNQDE GACRGGSSMI SSKLETVATQ GKALTCLADE VTLKVRKPYT ITKQREKWTE  60
EEHQRFVEAL KLYGRAWRQI EGECGIRLLI AEHVGTKTAI QIRSHAQKFF AKVARDSGTD  120
GDESLNAIDI PPPRPKKKPL HPYPRKMTDS PVTNKSVSGQ PERSSPPNAS GRESCSPDSV  180
LSEIGSDVSE YPVGEQQSSR FSPRSCTTDA HTANIISGQN DDESMTSKSN IVKEIPVASK  240
PVAASSSSIF SSGMECDFVP SETSYPDEKL AVEAPLASIK LFGQMVLVPD AKLALQSPAG  300
SCNSLPSKTT ENETETNNGN MSHGFQANSQ FILPVVSGNM IPPGCWLSQD MLGNNPEGVA  360
AFSTTIPWLS WYQDLVYRYI SSCSQTAAET TTPCQRPEDE EPQREGSSSG STVGSASEVE  420
DGNRSSETVE SKKYTTERDK WNNIKGFVPY KRCLAERDGM SSGVELEERE SQRVRVCS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768903.10.0PREDICTED: uncharacterized protein LOC104219851 isoform X1
RefseqXP_016493565.10.0PREDICTED: uncharacterized protein LOC107812899 isoform X1
TrEMBLA0A1S4BXE40.0A0A1S4BXE4_TOBAC; uncharacterized protein LOC107812899 isoform X1
TrEMBLA0A1U7VR700.0A0A1U7VR70_NICSY; uncharacterized protein LOC104219851 isoform X1
STRINGXP_009768903.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74472127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.13e-36MYB_related family protein