PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00885g07005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 421aa    MW: 46121.4 Da    PI: 6.0179
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00885g07005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1289.5e-40542042135
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.ssssaseceaesssssasns 85 
                                g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG d++sk++eWLl++a p+i el+ + ++++a++ ++e++ss++ ++
  Niben101Scf00885g07005.1  54 SGGKDRHSKVWTSKGLRDRRVRLSVNTAIQFYDLQDRLGCDQPSKAVEWLLKAAAPSIAELPPLeGFPDAQQLSDEKRSSAGVEP 138
                               689*************************************************************855555444333333333322 PP

                       TCP  86 ssg...............kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                               + +               ++++++++s++s++s+ s l+l++ esr kar+ra+er  ek + k++
  Niben101Scf00885g07005.1 139 GFDsadvemddddpnyhqQQQQQQPCSSNSETSKGSGLSLSRsESRIKARERAKERAVEKEKEKEN 204
                               22244455566666666555555569999****************************999998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.7E-4055201IPR005333Transcription factor, TCP
PROSITE profilePS5136931.17556114IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.68181200IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MEIEEIQTQD CKFPRISYQD EEDDIGEVKK SSFGDIGKLY GWPTSRIVRV SRASGGKDRH  60
SKVWTSKGLR DRRVRLSVNT AIQFYDLQDR LGCDQPSKAV EWLLKAAAPS IAELPPLEGF  120
PDAQQLSDEK RSSAGVEPGF DSADVEMDDD DPNYHQQQQQ QQPCSSNSET SKGSGLSLSR  180
SESRIKARER AKERAVEKEK EKENESSIVA HHHQNMHHSS SFTELLAGGM SNNNNNNNNN  240
SSPIHQNTTR QWSTNPLEYF TSGLLGPSST RAIDNSTGFS GQVYLGNPLQ PLIAVSSPMF  300
SISGDHQPEL QHFPFGGNNL VPVVTANGGS NSHNNTSNEY NLNFGISRGT LQSNSSSTSP  360
SILPHHFQRF SPIDGSQSLF LGTTMATAAA APNAASSYDA PLQLFYGNGY DHSDQIGKGK  420
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-2261115155Putative transcription factor PCF6
5zkt_B6e-2261115155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779111.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_009779112.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_016452455.10.0PREDICTED: transcription factor TCP2-like
TrEMBLA0A1S3YK280.0A0A1S3YK28_TOBAC; transcription factor TCP2-like
TrEMBLA0A1U7WGN20.0A0A1U7WGN2_NICSY; transcription factor TCP2-like
STRINGXP_009779111.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-37TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2