PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00868g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 352aa    MW: 40113.4 Da    PI: 7.7935
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00868g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.75.9e-36251172103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+y++++d+++++++sw e+ ++f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F
  Niben101Scf00868g00005.1  25 FLTKTYQLVDDPTTDHIVSWGEDDSTFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFF 100
                               9*****************************************************************99.........******** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                               k+g+k+ll++i+r+k++
  Niben101Scf00868g00005.1 101 KRGEKHLLCEIHRRKTS 117
                               **************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.1E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.1E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.99E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPTTDH IVSWGEDDST FIVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KRGEKHLLCE IHRRKTSQPQ  120
ISMNHHHHSL NHQMNMSGPN FFPNYPNNNR LSISPPDSDE LLLQQQPNIN WCDSPTTITS  180
SNNNTTVTAL SEDNERLRRS NNMLMSELAH MRKLYNDIIY FVQNHVKPVA LSSSYNPSSL  240
LPASATPIVQ KHMINPRQGM INNGMNIMMS NFNNVNSPSK TSQSSSVTIL EEAAADMGIN  300
RSTKLFGVPL MSKKRVHPEY SSSSFNMVET NKARLVLEKD DLGLNLMPPS SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-232111717123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019242811.10.0PREDICTED: heat stress transcription factor B-4
SwissprotQ9C6351e-115HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A1J6INU40.0A0A1J6INU4_NICAT; Heat stress transcription factor b-4
STRINGXP_009800135.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.14e-99heat shock transcription factor B4