PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00839g04010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 524aa    MW: 58985.2 Da    PI: 8.2011
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00839g04010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.75.1e-19165255199
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                               f k l++s+v++  ++ lp +f+++h   +++++ ++le+e+g+++e+k+i +k++    l++GW++++ a++L egD++vF+l+
  Niben101Scf00839g04010.1 165 FMKLLVRSHVGSCFWMGLPVPFCKNHL--PRKDTLVILESETGEEFEIKYIAEKTG----LSAGWRKYCTAHKLVEGDVLVFQLV 243
                               899********************8884..357789***************777777....***********************99 PP

                               SSSEE..EEEEE-S CS
                        B3  86 grsefelvvkvfrk 99 
                                  +f  +v v+r+
  Niben101Scf00839g04010.1 244 APARF--KVYVIRA 255
                               86666..8888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-20157256IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-21160256IPR015300DNA-binding pseudobarrel domain
CDDcd100173.46E-24163254No hitNo description
SMARTSM010194.5E-21165256IPR003340B3 DNA binding domain
PfamPF023629.4E-17165255IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112165256IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MKIKVVHRSE PPTQEHRISY PDTPKKEVFD EEPLGTQLPE PDPDPEPDSR KDNNLSLVDA  60
SNPINSVTPS AQTPSSSLLG KRRRKPKEII DQISPIPFRR KREIKKQPSA SQSNNAVADA  120
GGKSIITKQE RATADGSGSA TQLKSPIIIR AEEFLSSIAN EYPSFMKLLV RSHVGSCFWM  180
GLPVPFCKNH LPRKDTLVIL ESETGEEFEI KYIAEKTGLS AGWRKYCTAH KLVEGDVLVF  240
QLVAPARFKV YVIRANDLKE VDGALSLLNL DAPPKQSDAE GASAHNSKKR QRKSLPLTVV  300
HRRRQKVDLS KQLLALEAQS GNDSDEVASE ILEGSRSSGL AVNFRDIKNL EEFHILVNGV  360
CIDSELPEDI RRKYYELCCN KNAFLHDRLL QGLHCKLVAG VIFEVVNIAD SIRACKLTTK  420
RTEFDIWEKS LKSFELLGMN VGFLRTRLRW LVSLAFDSEG ASDTKRYWEA KNEWSRAEDE  480
IRNLETKLVE LKKTSEKYGA DVEALKSKAE SYELMFQGEV NAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
182101RRKPKEIIDQISPIPFRRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019228128.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A314KNS60.0A0A314KNS6_NICAT; B3 domain-containing protein
STRINGXP_009803081.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72042328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-37B3 family protein