PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00823g01006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CO-like
Protein Properties Length: 373aa    MW: 41878.8 Da    PI: 5.6177
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00823g01006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.81.9e-071659239
                  zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                              + r C+ ++e+ + l+C+ ++  lC +C  e H+       Ht+
  Niben101Scf00823g01006.1 16 QRRLCDFCSENTALLYCRADSAKLCFSCDREVHSTnqlftkHTR 59
                              5789*****************************66778888875 PP
2zf-B_box192.9e-0662104542
                  zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                                C+ +++ ++++ C ++++ +C++C  e+H +      H+++pl
  Niben101Scf00823g01006.1  62 LCDSCDSSPASILCCTDSCVFCHNCDWESH-NlslspaHERRPL 104
                               6*****************************.6688999988775 PP
3CCT60.74.7e-21327369143
                       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                               Re a++RYkeK+ktR++eK+irY sRK++AesR R+KGrF+k 
  Niben101Scf00823g01006.1 327 RETAVSRYKEKKKTRRYEKHIRYVSRKVRAESRTRIKGRFAKM 369
                               99***************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-121562IPR000315B-box-type zinc finger
PROSITE profilePS5011910.0961562IPR000315B-box-type zinc finger
PfamPF006431.1E-51759IPR000315B-box-type zinc finger
CDDcd000213.06E-61859No hitNo description
PROSITE profilePS501199.54258104IPR000315B-box-type zinc finger
CDDcd000211.19E-462104No hitNo description
SMARTSM003360.6163104IPR000315B-box-type zinc finger
PROSITE profilePS5101714.515327369IPR010402CCT domain
PfamPF062032.9E-15327369IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MTELKEDQEN QNQQAQRRLC DFCSENTALL YCRADSAKLC FSCDREVHST NQLFTKHTRW  60
LLCDSCDSSP ASILCCTDSC VFCHNCDWES HNLSLSPAHE RRPLEGFTGC PSVSELLSIL  120
GFEDLGKKAL LYGDSVTSDG GGYGFSDWLV WDTPSVVSLD DLIAPNDAGH NFQAIGVPPL  180
PKNRNAACGK HKEEILCQLR ELSMLEPNSS NDQDDIVPFQ FMKPAQNRYL GFKDSGFVQN  240
SAQAVVPSPE GSAFNWCCDT GEFTDQGFSS SLADCFIETK CLLPDRDSDV GDASGGAKEE  300
QSHNPPIAET FQMVPRVGHR ELNSQERETA VSRYKEKKKT RRYEKHIRYV SRKVRAESRT  360
RIKGRFAKMD MHQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016509923.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
TrEMBLA0A1S4D9640.0A0A1S4D964_TOBAC; zinc finger protein CONSTANS-LIKE 13-like
STRINGXP_009629412.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73622228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.14e-82B-box type zinc finger protein with CCT domain