PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00793g04011.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 305aa MW: 34354.4 Da PI: 5.0867

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00793g04011.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	62.7	6.3e-20	178	212	2	36
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EE CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkk 36 +Dgy+WrKYGqK+vk+s+fpr+YYrCts +C+ Niben101Scf00793g04011.1 178 EDGYRWRKYGQKTVKNSTFPRNYYRCTSVSCNNMN 212 8******************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-19	162	210	IPR003657	WRKY domain
SuperFamily	SSF118290	3.27E-17	169	214	IPR003657	WRKY domain
PROSITE profile	PS50811	18.383	172	208	IPR003657	WRKY domain
SMART	SM00774	1.5E-10	177	225	IPR003657	WRKY domain
Pfam	PF03106	2.4E-14	178	210	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MESYRDIAIK MEDPMSYFDN FPVISSSFTG LVSDYNFAVE GKNNTSINSS LGFMELLGVQ 60 DFSSASDFDV TNLDQLLPKE EKYHIEPAVS TAADESQNKL TVAAHESSNI LNTPSTPNFS 120 SISSETNEGH AQDAEGEVTE KEQTKTKQQL KAKKTVSQKK EREPRIAFMT KSEVDFLEDG 180 YRWRKYGQKT VKNSTFPRNY YRCTSVSCNN MNMINMPKPT LFPTRVFPSS APTATFPLQM 240 PFPINQFVQP RFNDLTAPLD SNLDHAALVA HGRRFCSTPA AAEIMRDQGL LQDLMSSRVV 300 EEDYR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016463359.1	0.0	PREDICTED: probable WRKY transcription factor 68 isoform X2
TrEMBL	A0A1S3ZG82	0.0	A0A1S3ZG82_TOBAC; probable WRKY transcription factor 68 isoform X2
STRING	XP_009789114.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1309	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47260.1	3e-25	WRKY DNA-binding protein 23