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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Niben101Scf00792g03002.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
NAC |
| Protein Properties |
Length: 405aa MW: 45683.3 Da PI: 5.4158 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf00792g03002.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 167.4 | 4.8e-52 | 32 | 159 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyW 83
l+pGfrFhPtdeelv +yL++k+ +k++++ ++++e+d+yk+ePw+L + ++k+++ ewyfFs+ d+ky +g+r nrat +gyW
Niben101Scf00792g03002.1 32 LAPGFRFHPTDEELVRYYLRRKACAKPFRF-QAVSEIDVYKSEPWELAEysSLKTRDLEWYFFSPVDRKYGNGSRLNRATGKGYW 115
579*************************99.88**************84346777888*************************** PP
NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
katgkd++v + k++++g+kktLvf++grap+g++t+Wvmheyrl
Niben101Scf00792g03002.1 116 KATGKDRPVRH-KSQTIGMKKTLVFHSGRAPDGKRTNWVMHEYRL 159
***********.999****************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 405 aa
Download sequence Send
to blast |
MEQEGALVIV PAAVPVTTAT PKRAVAPPPT SLAPGFRFHP TDEELVRYYL RRKACAKPFR 60
FQAVSEIDVY KSEPWELAEY SSLKTRDLEW YFFSPVDRKY GNGSRLNRAT GKGYWKATGK 120
DRPVRHKSQT IGMKKTLVFH SGRAPDGKRT NWVMHEYRLT DEELERAGVV QDAFVLCRIF 180
QKSGLGPPNG DRYAPFIEEE WDDDTALLVP GGETEDDVAN GDEARVEGND LDQDARHKAP 240
SRQSQNLLEP QPIPFICKRE RSPEDPEPLS LAQSKRSKRE DPSSSHANGS EDSTTSQQDP 300
PTTMMTTNYS PPSLLAFPLL EPLEPKESQP SNPPTFDSSN LEKSVPPGYL KFISNLENEI 360
LNVSMERETL KIEVMRAQAM INILQSRIDL LNKENEDLRR LVRGG
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 5e-51 | 31 | 182 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 5e-51 | 31 | 182 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 5e-51 | 31 | 182 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 5e-51 | 31 | 182 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 5e-51 | 31 | 182 | 16 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 5e-51 | 31 | 182 | 16 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}. |
