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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00788g03041.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 239aa MW: 28063 Da PI: 8.6046 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.6 | 1.2e-14 | 16 | 94 | 9 | 98 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +k+g + +p f+++ +g ++++ + + g++W vk+ ++++ l++GW++F+++++L+ gD++vF+++g++ef v+ Niben101Scf00788g03041.1 16 PGFKHG-IKIPIGFLKNLKGY--NHIEHAILRRAGEKWLVKV--NGGR----LENGWEKFAEEHDLQYGDMLVFRHEGNMEF--EVS 91 556666.99******777554..4567888999*********..8887....*************************99999..888 PP EE- CS B3 96 vfr 98 +f Niben101Scf00788g03041.1 92 IFH 94 875 PP | |||||||
2 | B3 | 59.2 | 7.3e-19 | 137 | 223 | 5 | 95 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +++++ l++++l++pk+fa e+g+++++ +lt++de+ rsW++ l r +s +++++GW+e + + LkegD ++F+++ + e Niben101Scf00788g03041.1 137 TVKPYCLSKDILSIPKQFAWENGLINKK-CDLTIRDEKQRSWNLVL--RSYSTNVYISGGWNEIRDTHCLKEGDRIMFEVVAD-E 217 568999****************988654.59***************..*******************************8874.4 PP E..EEE CS B3 90 felvvk 95 ++++ k Niben101Scf00788g03041.1 218 RKPTWK 223 445554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-20 | 3 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-20 | 4 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.914 | 7 | 96 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.63E-14 | 8 | 93 | No hit | No description |
SMART | SM01019 | 7.3E-14 | 10 | 96 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.2E-12 | 18 | 94 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.0E-17 | 131 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-18 | 132 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.801 | 133 | 230 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.18E-14 | 133 | 212 | No hit | No description |
SMART | SM01019 | 3.5E-18 | 134 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-16 | 136 | 225 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MKVSPKKPHF FKPILPGFKH GIKIPIGFLK NLKGYNHIEH AILRRAGEKW LVKVNGGRLE 60 NGWEKFAEEH DLQYGDMLVF RHEGNMEFEV SIFHSNQCER EYEQEQKAHN VEETSKKFEF 120 KGIDSHKPFS QTHFVRTVKP YCLSKDILSI PKQFAWENGL INKKCDLTIR DEKQRSWNLV 180 LRSYSTNVYI SGGWNEIRDT HCLKEGDRIM FEVVADERKP TWKFHAKSGE DASIIQEVD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016473039.1 | 1e-151 | PREDICTED: B3 domain-containing protein REM8-like | ||||
TrEMBL | A0A1S4A8Y6 | 1e-150 | A0A1S4A8Y6_TOBAC; B3 domain-containing protein REM8-like | ||||
STRING | XP_009612472.1 | 1e-152 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 1e-38 | B3 family protein |