PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00725g06004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 722aa    MW: 79967.4 Da    PI: 9.2371
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00725g06004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-182475156
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                              +++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a+++a++ l+g+
  Niben101Scf00725g06004.1 24 PRFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDQAARTLRGA 75
                              6799******.7*********....4456*************************985 PP
2AP258.41.7e-18390441156
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                               +++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a+++a++ l+g+
  Niben101Scf00725g06004.1 390 PRFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDQAARTLRGA 441
                               6799******.7*********....4456*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.7E-132474IPR001471AP2/ERF domain
CDDcd000187.59E-292482No hitNo description
SuperFamilySSF541712.03E-192582IPR016177DNA-binding domain
PROSITE profilePS5103220.4682582IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-282582IPR001471AP2/ERF domain
SMARTSM003805.6E-362588IPR001471AP2/ERF domain
PRINTSPR003674.0E-72637IPR001471AP2/ERF domain
PRINTSPR003674.0E-74864IPR001471AP2/ERF domain
PfamPF008478.7E-13390440IPR001471AP2/ERF domain
CDDcd000187.59E-29390448No hitNo description
SuperFamilySSF541712.03E-19391448IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-28391448IPR001471AP2/ERF domain
SMARTSM003805.6E-36391454IPR001471AP2/ERF domain
PROSITE profilePS5103220.468391448IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MKISAPQPGE NIRTRRKPSS RGHPRFVGVR QRPSGRWVAE IKDSLQKVRL WLGTFDTAED  60
AARAYDQAAR TLRGANARTN FELPKSNSHQ GTNFENAEPF NFEEACRTEE PENGLVGALK  120
AKLFNSKSSR SFIQAYASNC TSKAAIKPAV LSLENKKTLS QTGQAVTLEA EKLPKRDITH  180
NIGQGKNYSN TLFRGNHNLD YISLMSSDHQ PVISSQLWQN NKCNSGTNSA IMWANEQGRL  240
PWGEPQMSRG HDEVLFSATN NNNINTNIFY GGNSTTCTWP MSVSVLGTSE PTVDLSTFGE  300
VDYLNAPVMM PHMNSGLTQQ AASVPTEQQM IQFENGLWSG SESAAWDPFL LSNKIKKFPH  360
LRKQIKMKIS APQPGENIRT RRKPSSRGHP RFVGVRQRPS GRWVAEIKDS LQKVRLWLGT  420
FDTAEDAARA YDQAARTLRG ANARTNFELP KSNSHQGTNF ENAEPFNFEE ACRTEEPENG  480
LVGALKAKLF NSKSSRSFIQ AYASNCTSKA AIKPAVLSLE NKKTLSQTGQ AVTLEAEKLP  540
KRDITHNIGQ GKNYSNTLFR GNHNLDYISL MSSDHQPVIS SQLWQNNKCN SGTNSAIMWA  600
NEQGRLPWGE PQMSRGHDEV LFSATNNNNI NTNIFYGGNS TTCTWPMSVS VLGTSEPTVD  660
LSTFGEVDYL NAPVMMPHMN SGLTQQAASV PTEQQMIQFE NGLWSGSESA AWDPFLLSSV  720
LG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-15234471271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762261.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A1U7VB960.0A0A1U7VB96_NICSY; ethylene-responsive transcription factor CRF4-like
STRINGXP_009762261.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118691819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-18related to AP2 11