PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00712g03003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 386aa    MW: 43622.1 Da    PI: 6.9892
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00712g03003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.23.8e-54221491128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGfrFhPtdeel+++yL+ kv + ++     i+evd++++ePw+Lp+ +k +ekewyfFs rd+ky+tg r+nrat +gyWka
  Niben101Scf00712g03003.1  22 LPPGFRFHPTDEELITFYLASKVFNGTFCG-IQIAEVDLNRCEPWELPEVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKA 105
                               79*************************877.67***************8888999****************************** PP

                       NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               tgkd+ev+s+ +g+l g+kktLvfykgrapkgekt+Wvmheyrl
  Niben101Scf00712g03003.1 106 TGKDREVYSAtNGALLGMKKTLVFYKGRAPKGEKTKWVMHEYRL 149
                               ********9978899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-5918158IPR003441NAC domain
PROSITE profilePS5100553.35522167IPR003441NAC domain
PfamPF023659.3E-2823149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MLSMEEILCE LSREDMNNEK GLPPGFRFHP TDEELITFYL ASKVFNGTFC GIQIAEVDLN  60
RCEPWELPEV AKMGEKEWYF FSLRDRKYPT GLRTNRATGA GYWKATGKDR EVYSATNGAL  120
LGMKKTLVFY KGRAPKGEKT KWVMHEYRLD GDFSCRYSSK KNPIYQGEGQ NYGYPTSLKT  180
WPSSSFLNTA AAAAEATPNP ILAETPNPKT TTTTHWQESF QISQNSVQSL HDFYLFHHQE  240
NDLMKSLFNP INVSQTNLFP INNSVLSSAT SFSTPQSTKK YKEDINKNSS LSSFLVSNSK  300
KNEKHQVPLM QADTTMKTEA SFSPYSGCYN DQNPMATTFG MNNSSDWSLV GIEGMHFNGG  360
CTQSQMVLDH MRCPIKIAAE SWPLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-48111493140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009796445.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like isoform X1
RefseqXP_009796446.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like isoform X2
TrEMBLA0A1U7Y3B50.0A0A1U7Y3B5_NICSY; protein CUP-SHAPED COTYLEDON 3-like isoform X1
STRINGXP_009796446.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.13e-88NAC family protein