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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00709g01002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 453aa MW: 51006.4 Da PI: 5.4263 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 305.3 | 1.4e-93 | 57 | 450 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfs 85 ++lL++cA+a++s+d +laq++L+ l+++a pdgd++qRl+ f++AL r a+ +++k l+++ +++++ ++ ++ l f+ Niben101Scf00709g01002.1 57 EQLLVHCANAIESNDPTLAQQILWVLNNIAPPDGDSNQRLTCGFLRALIVRAAK--IGTCKLLTANLNHSMEtHKFSIIELAGFV 139 79****************************************************..667777766666554424455555555** PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLak 167 +++P+++f++ +aN aIleaveg + vHi+Df++++++Q p+L++a+++R egpp l++T+ g+ e ++ee+g +L + Niben101Scf00709g01002.1 140 DLTPWHRFGFTAANGAILEAVEGYSIVHIVDFSLTHCMQIPTLIDAISTRLEGPPLLKLTVAGATEDLppmLDLSYEELGAKLVN 224 ****************************************************************776698888999********* PP GRAS 168 fAeelgvpfefnvl.......vakrledleleeLrvkp......gEalaVnlvlqlhrll..............desvsleserd 225 fA++ +v +ef+v+ ++ +e+Lr+++ gEal++n++++lh+++ + + s++s r+ Niben101Scf00709g01002.1 225 FARSRNVMMEFRVIpssssdgFSNV-----IEQLRIQNlirpenGEALVINCHMMLHYIPeettvlsprfpldqSINSSVSSFRT 304 *************977644444444.....56665555555578****************************763344555688* PP GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhe 310 +Lk++++l P++vv+v+++ad +s++++ r+ +a++y + +d++++ lpr s++r+++E+ + ++i+nv+a+eg +r er e Niben101Scf00709g01002.1 305 MFLKAIRNLDPTIVVLVDEDADFTSNNLVGRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEAD-ICWKIENVIAHEGLQRLERLE 388 ***************************************************************.********************* PP GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +++W +r+++a F++ +se+ ++++k +l +++ g+ ++ +++ +vl+Wk++++v+++aW Niben101Scf00709g01002.1 389 PKGQWVQRMRNANFRSSGFSEDSVSEVKNMLDEHA-AGWGLKRDEEDIVLTWKGHNVVFATAW 450 ***********************************.999************************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 43.09 | 30 | 432 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.9E-91 | 57 | 450 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MMQFTESLPP SLHQQVSPIF SSLMLNMNDN QIQRARPWPG FPTSKNLGTI GDANCMEQLL 60 VHCANAIESN DPTLAQQILW VLNNIAPPDG DSNQRLTCGF LRALIVRAAK IGTCKLLTAN 120 LNHSMETHKF SIIELAGFVD LTPWHRFGFT AANGAILEAV EGYSIVHIVD FSLTHCMQIP 180 TLIDAISTRL EGPPLLKLTV AGATEDLPPM LDLSYEELGA KLVNFARSRN VMMEFRVIPS 240 SSSDGFSNVI EQLRIQNLIR PENGEALVIN CHMMLHYIPE ETTVLSPRFP LDQSINSSVS 300 SFRTMFLKAI RNLDPTIVVL VDEDADFTSN NLVGRLRSAF NYLWIPYDTV DTFLPRGSKQ 360 RQWYEADICW KIENVIAHEG LQRLERLEPK GQWVQRMRNA NFRSSGFSED SVSEVKNMLD 420 EHAAGWGLKR DEEDIVLTWK GHNVVFATAW LPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 5e-49 | 39 | 452 | 22 | 420 | Protein SHORT-ROOT |
5b3h_E | 5e-49 | 39 | 452 | 22 | 420 | Protein SHORT-ROOT |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019258371.1 | 0.0 | PREDICTED: scarecrow-like protein 32 | ||||
Swissprot | Q9SN22 | 1e-180 | SCL32_ARATH; Scarecrow-like protein 32 | ||||
TrEMBL | A0A314LGA7 | 0.0 | A0A314LGA7_NICAT; Scarecrow-like protein 32 | ||||
STRING | XP_009607182.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8781 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 0.0 | GRAS family protein |