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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00687g08017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 692aa MW: 78284.9 Da PI: 5.2018 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 56.7 | 5e-18 | 591 | 686 | 280 | 374 |
GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363 ++++ E + +g+ i+n+va+egaer+ r+ +l Wr+ + ++G+ +++lse+ qa+l+l++++ + +v+++ ++l+ Wk Niben101Scf00687g08017.1 591 NTMRRTEVFHIGEGIRNMVAAEGAERFTRNMKLDVWRAYFARFGMVEMELSESSWYQANLILKQFSqGSSCNVQNDGKALLVVWK 675 5677889999********************************************************88889************** PP GRAS 364 drpLvsvSaWr 374 + p+ s+S W+ Niben101Scf00687g08017.1 676 GTPIESISIWK 686 **********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 1.7E-15 | 591 | 686 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 692 aa Download sequence Send to blast |
MGSSSQICHQ EEKKTVSFFD YVANMLKESF QCLTIILLSL LLPLSFIVLA RLSVARYLIT 60 TSAEYYTLPD SLLVKIFLYA NPNILHVLVP LVAVSALIYG LTGRTILFIK QSADHMTYSK 120 PCLYTAWFFL FMLQLCVCIG VEGSIAIGIG GSSSFSHHER LCLLSRVIFF FGLHETTSFW 180 SKKGVKPVAN DTIFGVETAD DRVVEKVAMA MNFGVLWWWK LRDEVESLVV VAEVKRELIG 240 SVDLVDFVGW WLYYMTVAIG MVKIVKGLIW VCFVLFCGNV VELENAVYST RNDDKAGHNH 300 LQECGRNELV NRVIDPLFEL DSEDIDSLYS VLDLKYQENT SDEHVQLSED QQQNISDYCT 360 QSDDSSSNMD FPLQPVQIQS TFEASNRIQP QVPRLGNFHG KKTNPISSAS LELLNNCGRF 420 FKKSNEENLS NVHINEAHIQ YSTQMVDGLS MFIHPYASAL SGLSMEQTRD MELVHLLLAA 480 AEEVDQQQFH LASQSVARTT PEALTCHTEI PFSQVMQFAG VQAIIENVKG ATKIHLNWNS 540 VYMQALAEQL FMSDMKDLRV ESVNVKADGT VAVYCNVVLR TMISRPEYMD NTMRRTEVFH 600 IGEGIRNMVA AEGAERFTRN MKLDVWRAYF ARFGMVEMEL SESSWYQANL ILKQFSQGSS 660 CNVQNDGKAL LVVWKGTPIE SISIWKFFSG EY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016477658.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | K4C3Z1 | 0.0 | K4C3Z1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g009610.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4694 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 9e-11 | GRAS family protein |