PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00683g00016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 547aa    MW: 60845.6 Da    PI: 5.4339
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00683g00016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.32e-1361775471374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l+++L++cA+a+++++l  a++l+++l++ +s  g+p+qRl ay++e+L arla+s+s++yk+l+++e +   s+e +++++l++
  Niben101Scf00683g00016.1 177 LKQVLVACAKAIADNNLVTAEWLMSELRTVVSVCGSPIQRLGAYMLEGLVARLASSGSSIYKSLRCKEPT---SVELMSYMHLLY 258
                               5799*****************************************************************9...9*********** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168
                               e++P++kf++l aN aI++a+++e+++HiiDf+isqG QW++L++aLa+Rp+gpp++RiTg+++++s   +   +e +g+rL++ 
  Niben101Scf00683g00016.1 259 EICPYFKFGYLSANGAIVDAMKEENAIHIIDFQISQGSQWITLIHALAARPGGPPRIRITGIDDSTSAyaRGGGVEIVGRRLSST 343
                               ****************************************************************998899999************ PP

                      GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                               A++++vpfef++ va +++ +e+e+L+v++gE laVn++l lh+++desv ++++rd++L++vkslsPk+v++veqe+++n+ +F
  Niben101Scf00683g00016.1 344 AASCNVPFEFHP-VAASCSVVEIEHLKVRHGEPLAVNFALVLHHMPDESVGTQNHRDRLLRMVKSLSPKIVTLVEQESNTNTVQF 427
                               ************.7999******************************************************************** PP

                      GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                               + rfle+++yy ++f+s+++ lpr++++ri+vE+++l+reivn++acegaer+erhe le+Wr+r+ +aGF+p+pls+++++++k
  Niben101Scf00683g00016.1 428 FPRFLETMNYYLSIFESIDVALPRDHKQRINVEQHCLAREIVNIIACEGAERVERHELLERWRSRFLMAGFNPYPLSSSVNATIK 512
                               ************************************************************************************* PP

                      GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +ll+++++  y+++e++g+l+lgW +r Lv+ +aW+
  Niben101Scf00683g00016.1 513 TLLENYYQS-YTLDERNGALYLGWLNRDLVASCAWK 547
                               *******55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.115151528IPR005202Transcription factor GRAS
PfamPF035147.0E-134177547IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MRPSQNAKDI NEFNRFYNQP VEDQESFFLP SINNPNNNQL LDADCGQQTQ FSALKHNLYC  60
YVESSTGNAG ELVSDSPPAD TFFADDNSTM HQGSDSCPSD IHHSPNDTYH SSGNSSCFTS  120
DGTDLKHKLK ELETAMLGPG SESLESYNTT PLAAANQISS ESGKWVDMTE MMPSGDLKQV  180
LVACAKAIAD NNLVTAEWLM SELRTVVSVC GSPIQRLGAY MLEGLVARLA SSGSSIYKSL  240
RCKEPTSVEL MSYMHLLYEI CPYFKFGYLS ANGAIVDAMK EENAIHIIDF QISQGSQWIT  300
LIHALAARPG GPPRIRITGI DDSTSAYARG GGVEIVGRRL SSTAASCNVP FEFHPVAASC  360
SVVEIEHLKV RHGEPLAVNF ALVLHHMPDE SVGTQNHRDR LLRMVKSLSP KIVTLVEQES  420
NTNTVQFFPR FLETMNYYLS IFESIDVALP RDHKQRINVE QHCLAREIVN IIACEGAERV  480
ERHELLERWR SRFLMAGFNP YPLSSSVNAT IKTLLENYYQ SYTLDERNGA LYLGWLNRDL  540
VASCAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-6518454626378Protein SCARECROW
5b3h_A8e-6518454625377Protein SCARECROW
5b3h_D8e-6518454625377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804325.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_009804326.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_016487146.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A1S4BEA60.0A0A1S4BEA6_TOBAC; scarecrow-like transcription factor PAT1
TrEMBLA0A1U7YQT40.0A0A1U7YQT4_NICSY; scarecrow-like transcription factor PAT1
STRINGXP_009804325.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]