PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00646g03011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 484aa    MW: 53193.8 Da    PI: 6.0546
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00646g03011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.82.4e-24216269159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k      +d +++++tYeg+Hnh+
  Niben101Scf00646g03011.1 216 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRK------QDMSILITTYEGTHNHP 269
                               58***************************99******......599*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-25201271IPR003657WRKY domain
SuperFamilySSF1182907.32E-23209271IPR003657WRKY domain
PROSITE profilePS5081124.26211271IPR003657WRKY domain
SMARTSM007745.8E-29216270IPR003657WRKY domain
PfamPF031062.5E-21217269IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
METNKSESDE MEIDLSLKLD SREEEIEPLN EENQSSELLN AKTQGKDQEL SKAETSGSSK  60
TEEAVEQTMK DYYDLQAKFA VIHQNNHEKD HRKFLSLSGN DDTTEGLTRS PKFLGIKNRT  120
PSQTSQELDD IMDGDQLGLS LTLVSSNSSI TTNKLVESTE LEEGKEKIKE DNTAITTQIQ  180
NKGNLQGGLT SHMTTASPPN RKARVSVRAR CESATMNDGC QWRKYGQKIA KGNPCPRAYY  240
RCTVAPGCPV RKQDMSILIT TYEGTHNHPL PVGATAMAST TSAAASFMLV DSSINPLLNQ  300
AVNFPNYHNN SPNYSHHIPN SSSSFSPYFS NLRNNILNSS DPNIVLDLTK NISNDHHHQF  360
PFVSSSSNSS AVATTNQLSQ YSWMPKLPSN NYDGNSNTIV NNLFTSPKLQ GDHYHHQNSS  420
SNPILAENMS AIASDPKFRV AVATAISSLI NKDQSHPIST TIPHPGGGFP CEALTDAKLK  480
ELDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-18203273176WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800949.10.0PREDICTED: probable WRKY transcription factor 9
RefseqXP_016484769.10.0PREDICTED: probable WRKY transcription factor 9
TrEMBLA0A1S4B7C70.0A0A1S4B7C7_TOBAC; probable WRKY transcription factor 9
TrEMBLA0A1U7YNY30.0A0A1U7YNY3_NICSY; probable WRKY transcription factor 9
STRINGXP_009800949.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72872129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.17e-56WRKY DNA-binding protein 9