PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00635g04016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 507aa    MW: 57849.6 Da    PI: 7.1084
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00635g04016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012442464123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++Cp C++ F++   L  H r+H
  Niben101Scf00635g04016.1 442 HECPFCDRIFKSGQALGGHKRSH 464
                               78******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.24E-5733No hitNo description
PfamPF139124.9E-6931IPR007087Zinc finger, C2H2
PROSITE profilePS501579.141936IPR007087Zinc finger, C2H2
SMARTSM003550.23931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS501579.432101128IPR007087Zinc finger, C2H2
SMARTSM003550.46101123IPR015880Zinc finger, C2H2-like
PfamPF139123.0E-7102125IPR007087Zinc finger, C2H2
SuperFamilySSF576677.85E-7102123No hitNo description
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
SuperFamilySSF576677.85E-7364391No hitNo description
PfamPF139128.4E-7369393IPR007087Zinc finger, C2H2
PROSITE profilePS501579.432369396IPR007087Zinc finger, C2H2
SMARTSM0035512369391IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280371391IPR007087Zinc finger, C2H2
PfamPF139129.5E-9442464IPR007087Zinc finger, C2H2
PROSITE profilePS501579.245442464IPR007087Zinc finger, C2H2
SMARTSM003550.034442464IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280444464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MEENQDLKFV CKLCNKKYPC GKSLGGHMRS HVLTNSAEFE EKTEPQLEKL QSWNSGVKDF  60
NKENQHQSKF ELGGNSGYGL RENPKKTWRA VDSTSPLPQE KICQQCGKVF HSLKALCGHM  120
ACHSEKDKGA NYSDTEAEEE LRLRIRSKTK RYKRIVVKSS VCLVNDNTIN NGSSCVSEID  180
NEQDKEELAK CLMMLSKDSW NCVTSFVESS DNNSVVLETK SSSTDMRFIR KDGLKCVFNQ  240
NEMPRTKKKE DSNLELSVLD AEVESENSDS AYFLDENTVV ESDVSVDGLY RNGDIKWSTS  300
KMSDTVWCDE SWIDKEKGLN RTKRYPTESR SEYDDYRIAS YFDKCESRKR IRNSSYRLEL  360
ENESFKKKYE CFNCKKNFSS YQALGGHRPC HKKTNACIES INGTGENSVD AADRDDKHRE  420
TFSSRKPASA EKKIKPKKFK GHECPFCDRI FKSGQALGGH KRSHFIVGTA QNMNQSSPVK  480
KDIDDLLDLN LPAPVEDEDD EHAHLLS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775816.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A1U7WEZ10.0A0A1U7WEZ1_NICSY; zinc finger protein ZAT4-like
STRINGXP_009775816.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.17e-69C2H2-like zinc finger protein