PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf00612g02005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 178aa MW: 20920.4 Da PI: 6.0092

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00612g02005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.9	2.3e-08	13	48	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++vk++G + R +k+c++rw +yl Niben101Scf00612g02005.1 13 KGPWTAEEDRLLIEYVKLHGLK------------RNAKSCRLRWVNYL 48 79******************55............78899999999996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.9E-12	7	51	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.974	8	52	IPR017930	Myb domain
SMART	SM00717	3.7E-7	12	50	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-7	13	48	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.56E-16	14	75	IPR009057	Homeodomain-like
CDD	cd00167	5.63E-8	15	48	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.1E-6	52	74	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MCSWGMTKEG WRKGPWTAEE DRLLIEYVKL HGLKRNAKSC RLRWVNYLRP DLKKGQITSH 60 EEKLILGLHA RWGNSQKFKQ HQQQQQSNTD TDMIIPTLPQ GNQEMENLYQ NTADQEQDDN 120 FFYSMLNGYT PVPVLESSSN EDIMWDGLWN LDDFQSNFSN TTYDTIMVSH GRNMRAQI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009795299.1	3e-81	PREDICTED: myb-related protein 340-like
TrEMBL	A0A1U7Y7S0	7e-80	A0A1U7Y7S0_NICSY; myb-related protein 340-like
STRING	XP_009795299.1	1e-80	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17516	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	7e-35	myb domain protein 305