PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00611g11027.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 277aa    MW: 30777.8 Da    PI: 9.4791
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00611g11027.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-12556147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                              +++WT eE+e l  +v+++G g Wk I r          R+  ++k++w+++
  Niben101Scf00611g11027.1  5 KQKWTSEEEEALRAGVAKHGAGKWKNIQRDPEfnhllYSRSNIDLKDKWRNL 56
                              79***********************************9************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.202161IPR017930Myb domain
SMARTSM007171.5E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-14556IPR009057Homeodomain-like
SuperFamilySSF466892.47E-14666IPR009057Homeodomain-like
CDDcd116602.20E-20657No hitNo description
PfamPF139211.0E-8863No hitNo description
SMARTSM005261.1E-15115180IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.22E-14115197IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.0E-13117191IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.555117185IPR005818Linker histone H1/H5, domain H15
PfamPF005385.8E-10120178IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV AKHGAGKWKN IQRDPEFNHL LYSRSNIDLK DKWRNLNVSA  60
SGQGPRDKSR TQKVKADAPA APLLITQGPV SSTPVLQDAA ADTVMEDSSK CALDGKTASK  120
YNQMIYDALS SLKEPNGSDT STIVNFIEQR HEVPQNFRRL LSSRLRRLVQ QDKLEKIENC  180
YRIKKEVLER TKTATAKQKH VGPRQFPSSA YLGDTVEEAA KTAVYKVAEA DNKSFVAAEA  240
AKEEARVSKM AEDQESLLLL AKDIFDRCSQ GGIVLMA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757029.10.0PREDICTED: telomere repeat-binding factor 4-like
RefseqXP_016464151.10.0PREDICTED: telomere repeat-binding factor 4-like
RefseqXP_019249157.10.0PREDICTED: telomere repeat-binding factor 4
SwissprotQ6WLH42e-68SMH3_MAIZE; Single myb histone 3
TrEMBLA0A1J6I4E40.0A0A1J6I4E4_NICAT; Telomere repeat-binding factor 4
TrEMBLA0A1S3ZIH50.0A0A1S3ZIH5_TOBAC; telomere repeat-binding factor 4-like
TrEMBLA0A1U7V4750.0A0A1U7V475_NICSY; telomere repeat-binding factor 4-like
STRINGXP_009757029.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-66MYB_related family protein
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]