PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00611g06002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GeBP
Protein Properties Length: 357aa    MW: 39297.4 Da    PI: 7.8964
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00611g06002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573118.14.9e-3735135197
                    DUF573   1 klfqrlwseeDeivlLqGlidfkaktgk....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfs 81 
                               klfqrlw++eDei lLqG++++++++g     s ++d++afy+++k++++++++k+qlveK+rrLKkK+++ ++k++sgk+++f+
  Niben101Scf00611g06002.1  35 KLFQRLWTDEDEIELLQGFLEYTTHRGGinssSHHHDTTAFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKMASGKDFVFK 119
                               579***********************9877644555************************************************* PP

                    DUF573  82 kehdqkifelskkiWg 97 
                               ++hdq +fe+s+kiW 
  Niben101Scf00611g06002.1 120 SSHDQATFEISRKIWS 135
                               ***************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.4E-3437135IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MLEHRINEFA AVTPPPTAAT IVEEKKPSAI DDSRKLFQRL WTDEDEIELL QGFLEYTTHR  60
GGINSSSHHH DTTAFYDQIK SKLQLDFNKN QLVEKLRRLK KKYRNVMSKM ASGKDFVFKS  120
SHDQATFEIS RKIWSNAVPV VVRGGGSAAA PQPEDGGFDD EDSHLNLNAN FVDHSHNGID  180
IKTPRPRKRS RGGAVKVEEK HGFIQHYYLP SPSGGGTNMS SPAPAPAPVP APGFTPFPMT  240
APQATAPPTT TAAASASAAA SIPSLIEETV RSCLSPIFKE LLNNVTNLSG SRSFGFGMAL  300
SPIPLGFGSS GAMNPDMLAD DKWRKQQMLE LEVYLRRLEL VQDQIKAQLE ELRSMNT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785461.10.0PREDICTED: uncharacterized protein LOC104233721
RefseqXP_016489373.10.0PREDICTED: uncharacterized protein LOC107809283
TrEMBLA0A1S4BKE70.0A0A1S4BKE7_TOBAC; uncharacterized protein LOC107809283
TrEMBLA0A1U7X7040.0A0A1U7X704_NICSY; uncharacterized protein LOC104233721
STRINGXP_009785461.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40522445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.13e-54DNA-binding storekeeper protein-related transcriptional regulator