PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00595g03001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 682aa MW: 75788.5 Da PI: 8.0408

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00595g03001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	76	97	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F + n++rH+r+H Niben101Scf00595g03001.1 76 KCEKCSREFYAPINYRRHMRLH 97 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.432	75	97	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	77	97	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 682 aa Download sequence Send to blast
MSVGKLRIGA APAAMKADEG NDSLDTLIRQ AIGKEPLFSF SRTGDGPVQW FQLLHGLEQQ 60 DNAGGWPMLT PLKLQKCEKC SREFYAPINY RRHMRLHRRA LNFDKLSVDE IKEVVSLHDV 120 SIKDLAGSSL VNDLATSLQK MAIWAHPQDY YKAGLALLEV IQGKPSKLPI TSQELFRILD 180 DASETTFLCA GTAESVQKYV FDGYAAKKGL ELKNLVACAS FLFEQKLVKA WFADKDAEAM 240 RCQKLLFEEE EAAQKRQVEL LERKKLKKLR LKEQRAREQS NWGRGEPADS FEGPIAESSV 300 RSVAASESSS STPEVSDDIS SCLELVQFSN NENMGIEAQL NISHPHLDLV EIQDVEPPPL 360 SANSRRHLPH TQWQVTKSQR TGINGFRQVQ NLEPVQKHGV IKDRGAPVNG SKIWTRKIRV 420 QNGERLRLDP QKEATDQNQS NCEVMIGSIS VPMKNCSTHG QGNCPAVERD TFESTEPAML 480 QKLNHVQKPA KHDVLQGGSN RAAVKLWRPV SRHGSGRQDP GEDVISVKLD NRTSSTENNL 540 RLCSRDNPTG KSRNYTCQVS DGNVLQGLGF CSVSAKAFLS QRWKEAISGD HVRLVLSDDT 600 QVLGQSDTQN GSSEAALPSA DQDQGILVKA DNQQANTGDL SFSSNGNSKV KFRQKPDKST 660 KIWRPQDIHT LWFAAVDLFL SS

Sequence ? help Back to Top

Protein Sequence Length: 682 aa Download sequence Send to blast

MSVGKLRIGA APAAMKADEG NDSLDTLIRQ AIGKEPLFSF SRTGDGPVQW FQLLHGLEQQ  60
DNAGGWPMLT PLKLQKCEKC SREFYAPINY RRHMRLHRRA LNFDKLSVDE IKEVVSLHDV  120
SIKDLAGSSL VNDLATSLQK MAIWAHPQDY YKAGLALLEV IQGKPSKLPI TSQELFRILD  180
DASETTFLCA GTAESVQKYV FDGYAAKKGL ELKNLVACAS FLFEQKLVKA WFADKDAEAM  240
RCQKLLFEEE EAAQKRQVEL LERKKLKKLR LKEQRAREQS NWGRGEPADS FEGPIAESSV  300
RSVAASESSS STPEVSDDIS SCLELVQFSN NENMGIEAQL NISHPHLDLV EIQDVEPPPL  360
SANSRRHLPH TQWQVTKSQR TGINGFRQVQ NLEPVQKHGV IKDRGAPVNG SKIWTRKIRV  420
QNGERLRLDP QKEATDQNQS NCEVMIGSIS VPMKNCSTHG QGNCPAVERD TFESTEPAML  480
QKLNHVQKPA KHDVLQGGSN RAAVKLWRPV SRHGSGRQDP GEDVISVKLD NRTSSTENNL  540
RLCSRDNPTG KSRNYTCQVS DGNVLQGLGF CSVSAKAFLS QRWKEAISGD HVRLVLSDDT  600
QVLGQSDTQN GSSEAALPSA DQDQGILVKA DNQQANTGDL SFSSNGNSKV KFRQKPDKST  660
KIWRPQDIHT LWFAAVDLFL SS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	261	268	ERKKLKKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009785122.1	0.0	PREDICTED: uncharacterized protein LOC104233422 isoform X2
TrEMBL	A0A1U7WYX7	0.0	A0A1U7WYX7_NICSY; uncharacterized protein LOC104233422 isoform X2
STRING	XP_009785120.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3722	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	7e-84	C2H2-like zinc finger protein