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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00577g12010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | CO-like | ||||||||
Protein Properties | Length: 447aa MW: 50572.3 Da PI: 4.9195 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 28.3 | 3.5e-09 | 16 | 59 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+++ +k+++++C ++ +lC++C ++ H+ H++v Niben101Scf00577g12010.1 16 ARACDHCIRKRARWYCPADDAFLCQNCDSSVHSAnplarrHERV 59 578*****************************667888888876 PP | |||||||
2 | CCT | 67.9 | 2.8e-23 | 394 | 437 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ Niben101Scf00577g12010.1 394 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 437 9*****************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.0E-10 | 14 | 61 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.85 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.2E-7 | 16 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.85E-11 | 17 | 61 | No hit | No description |
Pfam | PF06203 | 6.0E-18 | 394 | 436 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.083 | 394 | 436 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MVSGTKLASA MGGKTARACD HCIRKRARWY CPADDAFLCQ NCDSSVHSAN PLARRHERVR 60 LKTSSLKESS PDENFPNLES PVSVSLPSWH RGFTRKARTP RNGRKASKST EDDEEEEVIR 120 KNPTHLVPEI LSDENSLDEN EEQLLYRVPI FDPFVAELCT SATKSDQMEK VQTTTEVDSE 180 FKLESKETLQ HDNIHNGDLN KFHGTLPSEM ELAEFAADVE SLLGKGLDDE SFDMEGLGLL 240 GGCNKEENSV ECSMVSTYEK VKIEDEGEGD EVVMDTTTNS HDTDINGDTF EFKFDYDSPI 300 NINGEDEVGE IVMKINGEDG VVGDGNYNEK KKILLNLDYE GVLTAWADQR SPWTNGERPE 360 LDSNDCWPDC MGNCGTIHPY GIMNGHATVI DRGREARVSR YREKRRTRLF SKKIRYEVRK 420 LNAEKRPRMK GRFVKRSNLV PNYPLLK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 404 | 420 | RRTRLFSKKIRYEVRKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019238214.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 16-like | ||||
TrEMBL | A0A1J6JVW4 | 0.0 | A0A1J6JVW4_NICAT; Zinc finger protein constans-like 16 | ||||
STRING | XP_009627333.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1539 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 6e-99 | B-box type zinc finger protein with CCT domain |