PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00574g02005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 532aa    MW: 57498.5 Da    PI: 7.4208
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00574g02005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.71.2e-33239295259
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  Niben101Scf00574g02005.1 239 DDGYNWRKYGQKHVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHQ 295
                               8****************************************.***************8 PP
2WRKY105.92.1e-33418476159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+ +dpk v++tYeg+Hnh+
  Niben101Scf00574g02005.1 418 LDDGYRWRKYGQKVVKGNPYPRSYYKCTSQGCNVRKHVERAPSDPKSVITTYEGKHNHD 476
                               59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-30231297IPR003657WRKY domain
PROSITE profilePS5081123.984233297IPR003657WRKY domain
SuperFamilySSF1182902.22E-26237297IPR003657WRKY domain
SMARTSM007748.1E-38238296IPR003657WRKY domain
PfamPF031061.5E-25239295IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-37404478IPR003657WRKY domain
SuperFamilySSF1182901.03E-29410478IPR003657WRKY domain
PROSITE profilePS5081138.985413478IPR003657WRKY domain
SMARTSM007741.3E-39418477IPR003657WRKY domain
PfamPF031064.0E-26419476IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MVENEASSSA SSSRVPMRPT ITLPPRASVE NLFMGGPGGI SPGPMTLVSS FFSDPESEYP  60
SFSQLLAGAM ASPAAFSGQR QGFPPLPETT VFISKGKESG SGDMDFGFKQ NRPSGLVITQ  120
SPMFTIPPGL SPAGLLGSPL LFSPGQGPFG MSHQQALAQV TAQAAYPQSQ MHIQPDYPTS  180
SAAPAPSFSQ FQSLTSNATA NKPIPPPASD PNVMKEASDV SLSDQRSEPA SSAVDKPADD  240
GYNWRKYGQK HVKGSEYPRS YYKCTHPNCP VKKKVERSLD GQVTEIIYKG QHNHQPPQSS  300
KRSKDSGNPN GNNNLQGPSE LSSEGVAGTL NNSKDSMPSY SLRMKDQESS QATHDQVSGS  360
SEGEEVGDAE TIADGNDERE SKRRAIEVQT SEAASSASHR AVAEPRIIVQ TTSEVDLLDD  420
GYRWRKYGQK VVKGNPYPRS YYKCTSQGCN VRKHVERAPS DPKSVITTYE GKHNHDVPAA  480
RNSSHNTANN SVSQMRPHNP VVDKQDATRR IGFSNNEQQP IALLRFKEEQ VP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-41239479878Probable WRKY transcription factor 4
2lex_A4e-41239479878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619961.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI901e-168WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A1S3XR750.0A0A1S3XR75_TOBAC; probable WRKY transcription factor 4
STRINGXP_009619961.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-136WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]