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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Niben101Scf00571g06006.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
C3H |
| Protein Properties |
Length: 239aa MW: 27044.1 Da PI: 8.728 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf00571g06006.1 | genome | BTI | - |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 24.1 | 6.5e-08 | 29 | 52 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
k++lC+ffar G C G+ C F H+
Niben101Scf00571g06006.1 29 KRVLCKFFAR-GACLKGEHCDFLHD 52
99********.*************6 PP
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| 2 | zf-CCCH | 23.4 | 1e-07 | 60 | 80 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
C ++++ G+C +G+rC++ H+
Niben101Scf00571g06006.1 60 VCTYYQK-GICAFGSRCRYEHV 80
5******.***********997 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 15.009 | 27 | 54 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 4.3E-5 | 27 | 53 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.9E-6 | 28 | 55 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 9.94E-8 | 29 | 52 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF15663 | 1.9E-7 | 32 | 90 | No hit | No description |
| PROSITE profile | PS50103 | 13.31 | 55 | 82 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.49E-5 | 57 | 79 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0022 | 57 | 81 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:3.30.40.10 | 9.6E-10 | 141 | 208 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| SuperFamily | SSF57850 | 1.79E-12 | 141 | 212 | No hit | No description |
| CDD | cd00162 | 9.49E-4 | 147 | 208 | No hit | No description |
| PROSITE profile | PS50089 | 12.238 | 148 | 206 | IPR001841 | Zinc finger, RING-type |
| SMART | SM00184 | 9.4E-7 | 148 | 205 | IPR001841 | Zinc finger, RING-type |
| Pfam | PF00097 | 2.5E-7 | 148 | 205 | IPR018957 | Zinc finger, C3HC4 RING-type |
| PROSITE pattern | PS00518 | 0 | 172 | 181 | IPR017907 | Zinc finger, RING-type, conserved site |
| Sequence ? help Back to Top |
| Protein Sequence Length: 239 aa
Download sequence Send
to blast |
TATSPRLQSA ELTSQFIFNS QSKVETMSKR VLCKFFARGA CLKGEHCDFL HDSKDVPNNV 60
CTYYQKGICA FGSRCRYEHV KITRSQPSLP SSSASIVELK RVNATDQSIC SSSTAGNCPQ 120
GKKEEHMKTC ETREKQLDLL KHSQEIECGV CLERVLSKTI MAERKFGILS ECDHPFCISC 180
IRNWRSSSPS IGMDVNSTLR ACPICRKHSY FVIPSVIWYS TKEEKQEIIS SYKAKLRFL
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