PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00508g09017.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family BBR-BPC
Protein Properties Length: 333aa    MW: 37169.1 Da    PI: 9.2814
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00508g09017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3735.3e-11413331301
                 GAGA_bind   1 mdddgsre..rnkg....yyepa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverd 78 
                               mdd+g++e  r+k+    ++ ++ +s+k     q+m+++ erda+i+ernlalsek+aa+aerdma lqrd+a+aer+ a++erd
  Niben101Scf00508g09017.1   1 MDDSGHHEngRHKPpkgqWFMQHqPSMK-----QIMAIMGERDAAIQERNLALSEKRAALAERDMAILQRDSAIAERKSAIMERD 80 
                               8999998878887633355556656777.....**************************************************** PP

                 GAGA_bind  79 nkllalllvensla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealp.ieeaaeeakekkkkkkrqra 156
                               n++++l+++ens++    s +p+g+q+ +++k++++ qq +++ pql+++ ++ ++++++e+    + aa+e +++ ++k     
  Niben101Scf00508g09017.1  81 NAITTLQYRENSMNsgnmSPCPPGCQIAHEVKHMHHPQQrVHHqPQLGEPIFNHSDMHMNESSLpSSPAAPEPTKSCRNK----- 160
                               ************99999889******************975556*********999998776540232333322222222..... PP

                 GAGA_bind 157 kkpkekkakkkkkksekskkkvkkesad.er............................skaekksidlvlngvslDestlPvPv 212
                                + ke k  +  kk++k+ kkvkke+++ ++                            sk ++k++ l+ln+vs+Dest+PvP+
  Niben101Scf00508g09017.1 161 -RSKEAKLVSSSKKTSKQSKKVKKEGEElSKtmldesqewngaqemgggsddvnrqlgvSKPDWKDQALGLNQVSFDESTMPVPI 244
                               .22222222222222223333333333321134455567889******************************************* PP

                 GAGA_bind 213 CsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkf 297
                               CsCtG+lr CYkWGnGGWqS+CCt ++S+yPLP+ +++r+aRi+grKmS++af+klL++LaaeG+dlsnpvDLkd WAkHGtn++
  Niben101Scf00508g09017.1 245 CSCTGILRPCYKWGNGGWQSSCCTNNLSMYPLPALPNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKDNWAKHGTNRY 329
                               ************************************************************************************* PP

                 GAGA_bind 298 vtir 301
                               +ti+
  Niben101Scf00508g09017.1 330 ITIK 333
                               ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062174.6E-981333IPR010409GAGA-binding transcriptional activator
SMARTSM012268.5E-1591333IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDDSGHHENG RHKPPKGQWF MQHQPSMKQI MAIMGERDAA IQERNLALSE KRAALAERDM  60
AILQRDSAIA ERKSAIMERD NAITTLQYRE NSMNSGNMSP CPPGCQIAHE VKHMHHPQQR  120
VHHQPQLGEP IFNHSDMHMN ESSLPSSPAA PEPTKSCRNK RSKEAKLVSS SKKTSKQSKK  180
VKKEGEELSK TMLDESQEWN GAQEMGGGSD DVNRQLGVSK PDWKDQALGL NQVSFDESTM  240
PVPICSCTGI LRPCYKWGNG GWQSSCCTNN LSMYPLPALP NKRHARIGGR KMSGSAFTKL  300
LSRLAAEGHD LSNPVDLKDN WAKHGTNRYI TIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803495.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803496.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803498.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803499.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803500.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803501.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803502.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803503.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803504.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803505.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803506.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803507.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
SwissprotQ8L9991e-138BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A1U7YND60.0A0A1U7YND6_NICSY; protein BASIC PENTACYSTEINE6-like
STRINGXP_009803495.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53532338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-127basic pentacysteine 6