PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Niben101Scf00494g08002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 246aa MW: 27213.2 Da PI: 5.5553

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00494g08002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00091	88	110	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F ++ L H++ H Niben101Scf00494g08002.1 88 FTCNFCKRKFYSSQALGGHQNAH 110 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.86E-6	86	115	No hit	No description
PROSITE profile	PS50157	11.219	88	115	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	90	110	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
METSNFDIEV QVSSGMDSDI TSQVASNIEF SQLRSEHLSL DLSLSFKSSI DEFASQDSIG 60 FSVSSTCESS NEPVPQNSGG EAAVRRVFTC NFCKRKFYSS QALGGHQNAH KRERTLAKRA 120 MRMGIFSDQR YANLAAMPLH GPNARSLGVK AHSSVHPQGF PATMSSLDFR TSARFEYGQQ 180 QSPPLYVEDI DEADQLLWPG SFRQVTNTDV SHHPTFAFAG CSNMTSLEWT PSVEKDELTP 240 DLTLRL

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009775040.1	1e-172	PREDICTED: zinc finger protein 4-like
Refseq	XP_016486809.1	1e-172	PREDICTED: zinc finger protein 4-like
Refseq	XP_016512037.1	1e-172	PREDICTED: zinc finger protein 4-like
Swissprot	Q39263	1e-37	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A1S4BD46	1e-170	A0A1S4BD46_TOBAC; zinc finger protein 4-like
TrEMBL	A0A1S4DF09	1e-171	A0A1S4DF09_TOBAC; zinc finger protein 4-like
TrEMBL	A0A1U7WLA8	1e-171	A0A1U7WLA8_NICSY; zinc finger protein 4-like
STRING	XP_009775040.1	1e-171	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1283	23	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	7e-40	zinc finger protein 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]