 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Niben101Scf00479g03014.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 203aa MW: 23476.5 Da PI: 8.2045 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf00479g03014.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.1 | 7.4e-19 | 21 | 74 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
+ ++++eq+++Lee F +++++ e++ +LAk+lg++ rq+ +W+qNrRa++k+
Niben101Scf00479g03014.1 21 KKRLNQEQVKRLEESFDSTKKLEPEQKIQLAKELGVPPRQIAIWYQNRRARWKN 74
56799***********************************************95 PP
|
| 2 | HD-ZIP_I/II | 108.6 | 4.3e-35 | 20 | 111 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86
+k+rl++eqvk LEesF++++kLepe+K +la+eLg+ prq+a+W+qnrRAR+k++ lE dy+aL+ ++d+ +e++++eke+e+
Niben101Scf00479g03014.1 20 NKKRLNQEQVKRLEESFDSTKKLEPEQKIQLAKELGVPPRQIAIWYQNRRARWKNQSLELDYNALQLQLDTALAEKRKIEKENER 104
79*********************************************************************************** PP
HD-ZIP_I/II 87 Lreelke 93
Lr elk+
Niben101Scf00479g03014.1 105 LRGELKK 111
**99986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 203 aa
Download sequence Send
to blast |
MNNFLNSQYL HKHQSILNHN KKRLNQEQVK RLEESFDSTK KLEPEQKIQL AKELGVPPRQ 60
IAIWYQNRRA RWKNQSLELD YNALQLQLDT ALAEKRKIEK ENERLRGELK KVNGMLVACK 120
KAQGHEETQG FVPLNATNPI SSGCEEGVVS SNYQEDVSCL LIKNNSDSNL QFDELYACLM 180
GAEEGSNCRL SWQNGKDLWV WKS
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
