PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00478g02010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 343aa    MW: 37691.7 Da    PI: 5.222
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00478g02010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.91.7e-16163218358
                               XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                               ++kr rr ++NRe+ArrsR+RK+a ++ Le+ v+++ +eN++L k+l   +++++ 
  Niben101Scf00478g02010.1 163 DIKRIRRQASNRESARRSRRRKQAHLADLENQVDQFRGENESLFKQLADATQQYKD 218
                               58******************************************888877777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.0E-16161225IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.6E-12161217No hitNo description
PROSITE profilePS5021711.059163215IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.2E-11164216No hitNo description
PfamPF001703.8E-14164220IPR004827Basic-leucine zipper domain
PROSITE patternPS000360168183IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEKKMANFAN IRDMKKSPSL LALEEYFKTG DGFGGIDHHQ YINNNNNNNI NDDDNNNNAH  60
ADIFGDICSV APSFTMSNQE MVNGFSNCAL TDKPLWSPNL TPKSCISATV DSQSSICAGS  120
PTPTIMPKMR DSPVMGATSG SYSDDDDLDG EVGPCEQSTD PLDIKRIRRQ ASNRESARRS  180
RRRKQAHLAD LENQVDQFRG ENESLFKQLA DATQQYKDAL TNNRVLKSDV EALRAKVKLA  240
EDMVARGPLT STSLSHLLQN YLNTPQPLGT NNNNLYRLNN VSPTITVPGE DAWSAISGQN  300
PVIGVENVNA FNRNFKNGGA MSDAVSCVSD VWSWESHVPS ISK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177184RRSRRRKQ
2179184SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016449896.10.0PREDICTED: basic leucine zipper 9-like
SwissprotQ9FUD34e-63BZIP9_ARATH; Basic leucine zipper 9
TrEMBLA0A1S3YCD10.0A0A1S3YCD1_TOBAC; basic leucine zipper 9-like
STRINGXP_009801058.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81392229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-46basic leucine zipper 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]