PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00472g02003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 209aa    MW: 23759.2 Da    PI: 9.2522
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00472g02003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer74.21.9e-231059457
               ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                              v+Y eC++N Aas+ g+a+DGCgEf+p+    gt ++l CaAC CHRnFHR+ +
  Niben101Scf00472g02003.1 10 VKYGECMHNYAASTMGYALDGCGEFCPN----GTLDSLICAACHCHRNFHRKME 59
                              79*************************9....899****************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257749.0E-121057IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.4E-191058IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.4E-191157IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152320.8461258IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.1E-13134194IPR009057Homeodomain-like
SuperFamilySSF466891.43E-6138194IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MASNNKHFLV KYGECMHNYA ASTMGYALDG CGEFCPNGTL DSLICAACHC HRNFHRKMEM  60
EVEVETQVEL SILSNTHHNR GTSLVIVVPP TPTFQQQSRI HPRQKYGKNN VVATPPQGAE  120
TATEMGGGEI EVVEQMSTKR KRINSEQKER VKAFAEKIGW RWTKYNKEVK PFCAEIGITP  180
YFLKNWIDNN RRRFGPKKVI KLEKEGSVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019261875.11e-117PREDICTED: zinc-finger homeodomain protein 4-like
TrEMBLA0A314L8S21e-134A0A314L8S2_NICAT; Zinc-finger homeodomain protein 6
STRINGXP_009799887.11e-112(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108891118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-26homeobox protein 22