PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00466g04027.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 588aa    MW: 64287.2 Da    PI: 7.1424
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00466g04027.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.51.1e-11428487564
                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
                    bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 
                               kr++r   NR +A rs +RK  +i+eLe kv++L++e ++L  +l  l+  +a l+s+++
  Niben101Scf00466g04027.1 428 KRAKRILANRQSAARSKERKMRYIAELEHKVQTLQTEATTLSAQLTLLQRDSAGLTSQNH 487
                               9******************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.5E-19424488IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.795426489IPR004827Basic-leucine zipper domain
PfamPF001703.6E-10428487IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.6E-11428485No hitNo description
SuperFamilySSF579595.91E-11428484No hitNo description
CDDcd147037.96E-24429480No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MGGDNEEGNS DMVQRLQSSF GTSSSSLPKQ HQSLLSMNQL DIPQLTSSSQ FRGQMKQFSP  60
NFSVENSTSK RVGIPPSHPQ MPPISPYSQI PVTRPVNQQM GMQNFTSPGP SHSRPLSQPS  120
FFSLDSLPPL SPSPYRESSS TSMSDPISAD VSMGDQDGNS HSLLPPSPFT RCNSSRAGES  180
LPPRKAHRRS NSDIPFGFSA MMQSSPPLVP LRSPGSLERS VPSREKPIQL VKREAMWDKG  240
NDSNAEGMGE RKSEGEVVDD LFSAYMNLDN IDALNSSGTD DKLGNENRED LDSRASGTKT  300
NGGDSSDNEA TSSVNDSGSS MQRLGISSSV EKKEGIKRSA VGDIAPTTRH YRSVSMDSFM  360
GKLNFVDDSP KLPPSPGPRP GQLSPTSSLD ANSNSFSLEF GNGEFSGAEL KKIMANEKLA  420
EIALADPKRA KRILANRQSA ARSKERKMRY IAELEHKVQT LQTEATTLSA QLTLLQRDSA  480
GLTSQNHELK FRLQAMEQQA QLRDALNEAL TAEVQRLKLA SAEISADAAK FQQLSLNPQM  540
FQLQQQQSTQ LNMHHLQQQQ QQQQQSSQPP QHAQQQLNSS TPSKNESK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016480185.10.0PREDICTED: probable transcription factor PosF21
RefseqXP_016480186.10.0PREDICTED: probable transcription factor PosF21
RefseqXP_016480187.10.0PREDICTED: probable transcription factor PosF21
TrEMBLA0A1S4ATW70.0A0A1S4ATW7_TOBAC; probable transcription factor PosF21
STRINGXP_009627336.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12652478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-134bZIP family protein