PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf00466g03020.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

BBR-BPC

Protein Properties

Length: 313aa MW: 35097.9 Da PI: 9.8436

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00466g03020.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	309.2	1.4e-94	34	313	16	301
GAGA_bind 16 paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvq 100 +++++ +++++ + aerda+++er+ a++ek+ ++ erd a +qrd+a+a+r+ a+ erdn+++al ++e +++ +l g+ Niben101Scf00466g03020.1 34 DQEAFV--MNTKIRMLCAERDAAVEERDRAVIEKNTVLTERDLAIQQRDTAIADRDTAIKERDNAIAALHFQESTMNGTL--GC- 113 335565..7888888899***************************************************999866544..44. PP GAGA_bind 101 vlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesade 185 sgtk ++++++ + +ds r+ ++a+pi+ +e+ ++ ++k++ ++++ ++k+ k +k++k +++ +++ + + Niben101Scf00466g03020.1 114 RTSGTKRPNQTKNHC-DNSTDSICINRDVPLTDAFPISAISSEVAKALQVKRT-KGNRGMSRKSAKSPRKTKKVNEDLNRHLTTD 196 346777777666644.4444444445888999999999988888888777744.4444444444444444566667777777677 PP GAGA_bind 186 rskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklL 269 skae++ +dl ++n+++++es++P+PvC+CtG++rqCYkWG+GGWqS+CCtt +S yPLP+ +++r+aRi+grKmS+++f++lL Niben101Scf00466g03020.1 197 GSKAEWDAQDLgSINQIKFEESSMPIPVCTCTGIPRQCYKWGSGGWQSSCCTTYLSEYPLPQLPNKRHARIGGRKMSGSVFSRLL 281 89*****88******************************************************************** PP GAGA_bind 270 ekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +Laa G+dl+ p+DLk++WAkHGtn+++ti+ Niben101Scf00466g03020.1 282 TRLAAVGHDLAMPIDLKTYWAKHGTNRYITIK 313 *****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	2.7E-114	1	313	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.8E-90	1	313	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MDDGGRRESR RHRMDCSKGG HAPWNVVPPY QMKDQEAFVM NTKIRMLCAE RDAAVEERDR 60 AVIEKNTVLT ERDLAIQQRD TAIADRDTAI KERDNAIAAL HFQESTMNGT LGCRTSGTKR 120 PNQTKNHCDN STDSICINRD VPLTDAFPIS AISSEVAKAL QVKRTKGNRG MSRKSAKSPR 180 KTKKVNEDLN RHLTTDGSKA EWDAQDLGSI NQIKFEESSM PIPVCTCTGI PRQCYKWGSG 240 GWQSSCCTTY LSEYPLPQLP NKRHARIGGR KMSGSVFSRL LTRLAAVGHD LAMPIDLKTY 300 WAKHGTNRYI TIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019224824.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4
Refseq	XP_019225440.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4
Swissprot	Q8S8C6	1e-106	BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBL	A0A1J6JJF0	0.0	A0A1J6JJF0_NICAT; Protein basic pentacysteine4
STRING	XP_009804621.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9287	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	1e-108	basic pentacysteine 4