PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 286aa MW: 31273.5 Da PI: 7.9505

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00457g05004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.6	0.0018	103	125	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++Fs+ L H +H Niben101Scf00457g05004.1 103 FQCKTCNRCFSSFQALGGHRASH 125 89**********99999998887 PP
2	zf-C2H2	13.4	0.00023	194	216	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Niben101Scf00457g05004.1 194 HECSICGAEFTSGQALGGHMRRH 216 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	5.9E-10	102	127	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.84E-9	102	125	No hit	No description
SMART	SM00355	0.23	103	125	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.554	103	130	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	105	125	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.84E-9	189	216	No hit	No description
Pfam	PF13912	9.5E-13	193	217	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	194	216	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.723	194	216	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	196	216	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MQQNVDRHMN MVMKRRRTKR PRPPSPLALT IATNSCSTVE GASDGGGSGG ELDGHVANSS 60 SLSNCGIDQF AKNSEEEEDM ANCLILLAQG HNQKSQSSSL DVFQCKTCNR CFSSFQALGG 120 HRASHKKPKS TTLEEIKNSK PIEQVATCLK FNEDHVTTLS LQIPSNNNNS NSNSNNNNNN 180 SNNNNNGKSK TRVHECSICG AEFTSGQALG GHMRRHRPLP NSITIAASST SNEESHDQTK 240 NTRNFLSLDL NLPAPEDDHR QITKFSFASK EQVIVFSASP LVDCHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	19	MKRRRTKR
2	18	22	KRPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269\|PubMed:12837949, ECO:0000269\|PubMed:16244149}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009782985.1	1e-162	PREDICTED: zinc finger protein ZAT5-like
Refseq	XP_016507626.1	1e-162	PREDICTED: zinc finger protein ZAT5-like
Swissprot	Q681X4	3e-50	ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBL	A0A1S4D2L9	1e-160	A0A1S4D2L9_TOBAC; zinc finger protein ZAT5-like
TrEMBL	A0A1U7X973	1e-160	A0A1U7X973_NICSY; zinc finger protein ZAT5-like
STRING	XP_009782985.1	1e-161	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	2e-49	C2H2 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]