PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00425g03034.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 302aa    MW: 34687.6 Da    PI: 4.5837
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00425g03034.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.7e-1986139356
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               k++++t++q++ Le+ Fe+ +++  e++ +LAk+lgL+ rq+ +WFqNrRa+++
  Niben101Scf00425g03034.1  86 KKRRLTANQVQFLEKSFEEVNKLEPERKDQLAKELGLQPRQIAIWFQNRRARWR 139
                               56789************************************************9 PP
2HD-ZIP_I/II125.13.3e-4085177193
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               ekkrrl+++qv++LE+sFee +kLeperK +la+eLglqprq+a+WFqnrRAR++tkqlE++yeaL+++yd+lk++  +L ke++
  Niben101Scf00425g03034.1  85 EKKRRLTANQVQFLEKSFEEVNKLEPERKDQLAKELGLQPRQIAIWFQNRRARWRTKQLENNYEALRNKYDNLKADYINLLKEKD 169
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreelke 93 
                               +Lr+++++
  Niben101Scf00425g03034.1 170 DLRAQVSQ 177
                               ***99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.70281141IPR001356Homeobox domain
SMARTSM003894.3E-1984145IPR001356Homeobox domain
SuperFamilySSF466893.59E-1884152IPR009057Homeodomain-like
PfamPF000461.2E-1686139IPR001356Homeobox domain
CDDcd000863.57E-1786142No hitNo description
Gene3DG3DSA:1.10.10.602.9E-2087148IPR009057Homeodomain-like
PRINTSPR000317.0E-6112121IPR000047Helix-turn-helix motif
PROSITE patternPS000270116139IPR017970Homeobox, conserved site
PRINTSPR000317.0E-6121137IPR000047Helix-turn-helix motif
PfamPF021835.3E-11141182IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MAGPELFYGD AAGFNGILLQ NQRLMSSFAT KEAVASPRYS PSFLASGSMV SFRVVNGGNK  60
SDRSLFQSVE ENETDELEEY LNQPEKKRRL TANQVQFLEK SFEEVNKLEP ERKDQLAKEL  120
GLQPRQIAIW FQNRRARWRT KQLENNYEAL RNKYDNLKAD YINLLKEKDD LRAQVSQFTD  180
MLLHKEKEKG ELATSDIKEL SDASPKENMI DQKVSAITLK QHKDLNSLQS DMFDSERLVQ  240
PSILDQGDSS YAFEPDQSDL SQDEEENLSK NLVVQDHYPM TSSNLSCFGY SVEDQGFGFW  300
SF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019227837.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1
TrEMBLA0A314KNV70.0A0A314KNV7_NICAT; Homeobox-leucine zipper protein hat5
STRINGXP_009604802.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-41homeobox 1