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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Niben101Scf00416g07004.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
NAC |
| Protein Properties |
Length: 331aa MW: 37608.9 Da PI: 6.7909 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf00416g07004.1 | genome | BTI | - |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 170.6 | 4.8e-53 | 11 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgy 82
+ppGfrFhPtdeel+ +yL+kkv+ + ++ +vi+evd++k+ePwdL++ ++ + ++ wyfFs++dkky+tg+r+nrat++g+
Niben101Scf00416g07004.1 11 VPPGFRFHPTDEELLYYYLRKKVSYEATDW-DVIREVDLNKLEPWDLKEicRIGSgPQNAWYFFSHKDKKYPTGTRTNRATTAGF 94
69*************************999.99**************9545555524569************************* PP
NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
Wkatg+dk+++ ++++ +g++ktLvfy+grap+g+ktdW+mheyrl
Niben101Scf00416g07004.1 95 WKATGRDKAIYLSNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 140
********************************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MSGAGNGQLS VPPGFRFHPT DEELLYYYLR KKVSYEATDW DVIREVDLNK LEPWDLKEIC 60
RIGSGPQNAW YFFSHKDKKY PTGTRTNRAT TAGFWKATGR DKAIYLSNSK RIGMRKTLVF 120
YTGRAPHGQK TDWIMHEYRL DDNTADVEED GWVVCTVFKK KNYTRGFQHE LGEDDEEQQL 180
HFADHMKSGS SDPKENIQQP HHQACYDYAS NFDGSIHLPQ LLSPDLLSVN PCPQLPLSTN 240
MNLNECSHQN LLRITSAAGA AGCSSSTFNI IPQHDKFSGY WSFLDKLLAS NEGALQSQAA 300
IGNHLVNPTG TQKYPVFHHY GFDPDLFNFS K
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-46 | 8 | 162 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-46 | 8 | 162 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-46 | 8 | 162 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-46 | 8 | 162 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-46 | 8 | 162 | 17 | 170 | NAC domain-containing protein 19 |
| 3swm_B | 2e-46 | 8 | 162 | 17 | 170 | NAC domain-containing protein 19 |
| 3swm_C | 2e-46 | 8 | 162 | 17 | 170 | NAC domain-containing protein 19 |
| 3swm_D | 2e-46 | 8 | 162 | 17 | 170 | NAC domain-containing protein 19 |
| 3swp_A | 2e-46 | 8 | 162 | 17 | 170 | NAC domain-containing protein 19 |
| 3swp_B | 2e-46 | 8 | 162 | 17 | 170 | NAC domain-containing protein 19 |
| 3swp_C | 2e-46 | 8 | 162 | 17 | 170 | NAC domain-containing protein 19 |
| 3swp_D | 2e-46 | 8 | 162 | 17 | 170 | NAC domain-containing protein 19 |
| 4dul_A | 2e-46 | 8 | 162 | 14 | 167 | NAC domain-containing protein 19 |
| 4dul_B | 2e-46 | 8 | 162 | 14 | 167 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
| Publications
? help Back to Top |
- Fendrych M, et al.
Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
Curr. Biol., 2014. 24(9): p. 931-40
[PMID:24726156] - Bennett T,van den Toorn A,Willemsen V,Scheres B
Precise control of plant stem cell activity through parallel regulatory inputs.
Development, 2014. 141(21): p. 4055-64
[PMID:25256342] - Karve R,Suárez-Román F,Iyer-Pascuzzi AS
The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
Plant Physiol., 2016. 171(3): p. 2101-11
[PMID:27221617] - Kamiya M, et al.
Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
Development, 2016. 143(21): p. 4063-4072
[PMID:27803060]
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