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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00414g02003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 276aa MW: 31223.4 Da PI: 10.1939 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00035 | 116 | 135 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C++Cgk F +k +L H+r Niben101Scf00414g02003.1 116 TCSICGKKFLSKKSLFGHMR 135 7******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 150 | 57 | 79 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 7.2E-9 | 58 | 79 | No hit | No description |
Pfam | PF13912 | 6.6E-4 | 59 | 79 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.2E-9 | 110 | 137 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-4 | 114 | 137 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.492 | 115 | 142 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0021 | 115 | 137 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.7E-5 | 117 | 139 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 117 | 137 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MADKQEHRLI LKGSGSGTGT LWVIKDHNDD DHDQHNFGFE DEDKAQIQRK NNSPSRNICH 60 VYKKGFSSGK ALGGHMRIHN NQHIPLSKKR KLQMKKQEVI DILRKKKMGR NRPPITCSIC 120 GKKFLSKKSL FGHMRCHPDR NWRGIHPPPT ELSKAVGGWS VTAKRGRRTN SSEEEEQLRE 180 EVHYLMLLAH GHSLEDTGKL ETTNTNCNTA DKEEEKHICR PIKRMKKFKD LGSIQDASID 240 STVISSSFTL LLGSTNNIGT TMDDHKPQLS SSGQIS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 106 | KRKLQMKKQEVIDILRKKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019248442.1 | 1e-128 | PREDICTED: uncharacterized protein LOC109227700 | ||||
TrEMBL | A0A1J6IBC4 | 1e-127 | A0A1J6IBC4_NICAT; Uncharacterized protein | ||||
STRING | XP_009764490.1 | 1e-118 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2050 | 22 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26940.1 | 2e-18 | C2H2 family protein |