PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00398g07002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 567aa    MW: 62200.4 Da    PI: 4.9253
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00398g07002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox184.9e-061574855
                              -HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
                  Homeobox  8 tkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                              +++++ e+e+  +      p +e    LA+k            ++ +qV +WFqNrR+  
  Niben101Scf00398g07002.1 15 NATEVAEMEAILQAhdATMPAREVLVALAEKFsssaersgkiMVQMKQVWNWFQNRRYAI 74
                              555566666666643355666777777777777777777777999************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-9475IPR009057Homeodomain-like
SMARTSM003890.0091781IPR001356Homeobox domain
PROSITE profilePS500718.9241377IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-61379IPR009057Homeodomain-like
CDDcd000860.006531375No hitNo description
PfamPF167191.8E-41159286IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MGRPPSNGGP TFRFNATEVA EMEAILQAHD ATMPAREVLV ALAEKFSSSA ERSGKIMVQM  60
KQVWNWFQNR RYAIRAKTAK VPGKFSTPSV PQSDPAMVRT PAKLSASPVA QSDPAAVRIM  120
PQASQPISSP QVKSMPQAPQ PLPAPSAQNL GRSASDNIQM EFEAKSARDG AWYDVASFLS  180
HRSVETADPE VLVRFAGFGA EEDEWVNVRK HVRQRSLPCE SSECVAVLPG DLILCFQEGK  240
EQALYFDAHV LDAQRRRHDV RGCRCRFLVR YDHDQSEEIV PLRKVCRRPE TDYRLQQLNA  300
ESLKQQKIGN DITRGNTNKV YHPAETTQKA QTESMIKPAE PTQKQPAPED TTKPVPNVTP  360
MQLTDSLTGN TLAETTPQRM EEMKEKPVAG TTEVHREEKR EMPLEERMNE APAETAEKSP  420
AETTLKPPAA STSKPDEAPQ EPPTETTLKP PAASTTNTRE PPAASTLKPD EEPEKSPAET  480
PLKPPAASTS KPDEEPEQPP AETTLKPPAA STSKPDEEPE QPSAETTLKP QADSTSKLGE  540
APDEQPKEEE HVDAGATTAS MDHDDAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A1e-471602904134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-471602904134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-471602904134SHH1 SAWADEE
4iur_B1e-471602904134SHH1 SAWADEE
4iut_A1e-471602904134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-471602904134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-471602904134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-471602904134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A1e-471602904134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-471602904134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628383.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
SwissprotQ8RWJ71e-140SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A1J6I1U80.0A0A1J6I1U8_NICAT; Protein sawadee homeodomain-like 2
STRINGXP_009628382.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88032124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-126sequence-specific DNA binding transcription factors;sequence-specific DNA binding