PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00378g03005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 200aa    MW: 23025.7 Da    PI: 9.4428
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00378g03005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.84e-08108148954
                               HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                r RR++i +++  L++l+P       +K++ a++L +Av+Y+k L
  Niben101Scf00378g03005.1 108 ARHRREKISERMRILQRLVPGG-----TKMDTASMLDEAVHYVKFL 148
                               699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.32699148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-13100158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.22E-9101153No hitNo description
SuperFamilySSF474593.01E-14103159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-13105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-5109148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MELHDITRSM NNIEMTQLLP IYNSNYMMTT SPHSLSFMSN SIDEHNAQHL LSMHDETLDI  60
EKRSSMDAMR EMIFRMAMMQ PIHIDPESVK PPKRKNVKIS KDPQSVAARH RREKISERMR  120
ILQRLVPGGT KMDTASMLDE AVHYVKFLKK QLKSLEQAAI DRPMVAGFST TLMAQPVDYL  180
SSFRSCQTPH LMSSNVQMLS
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019225263.11e-135PREDICTED: transcription factor HEC2-like
SwissprotQ9SND41e-46HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A314KVH31e-134A0A314KVH3_NICAT; Transcription factor hec2
STRINGXP_009798816.11e-133(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.14e-49bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]