![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf00372g03026.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 138aa MW: 16352.1 Da PI: 10.6215 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.9 | 2.7e-11 | 41 | 117 | 10 | 89 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 + ++++l++p + +++++++ + + ++d++gr++e +++++k + r++l+kGW++ ++ n ++ D ++ ++++ + Niben101Scf00372g03026.1 41 AKRRDQLYVPVDVVRDYNLE--LPPRMFFRDSEGRKFETEVNIWKDG-RIWLKKGWRKICRWNVVEKEDRCICEFMRGKA 117 567899***********666..5567***************999985.89*******************99999876533 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-17 | 28 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-17 | 28 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.277 | 32 | 129 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.01E-8 | 33 | 125 | No hit | No description |
SMART | SM01019 | 0.0013 | 35 | 126 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-9 | 42 | 115 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 138 aa Download sequence Send to blast |
VVKRATMIKK RDVPDQYAVE IFRSGRATQP KNPYFVAKIR AKRRDQLYVP VDVVRDYNLE 60 LPPRMFFRDS EGRKFETEVN IWKDGRIWLK KGWRKICRWN VVEKEDRCIC EFMRGKANEV 120 LYLQVTVVKA GGVSNPSK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009769341.1 | 3e-91 | PREDICTED: B3 domain-containing protein REM20-like isoform X2 | ||||
Refseq | XP_019252155.1 | 6e-91 | PREDICTED: B3 domain-containing protein At4g34400-like | ||||
TrEMBL | A0A1J6J8N3 | 1e-89 | A0A1J6J8N3_NICAT; Putative b3 domain-containing protein | ||||
TrEMBL | A0A1U7VWL5 | 6e-90 | A0A1U7VWL5_NICSY; B3 domain-containing protein REM20-like isoform X2 | ||||
STRING | XP_009769340.1 | 4e-90 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1091 | 22 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60140.1 | 4e-15 | B3 family protein |