PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00361g04019.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 559aa    MW: 64178.6 Da    PI: 5.2832
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00361g04019.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.72e-20424497171
                  trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnk..rykkikegekkr 71 
                               rW++ ev aLi++r+++e+++++ +  k+ lWee+s+ m++ gf+rs+ +Ckekwenl+k    k++ke+ +++
  Niben101Scf00361g04019.1 424 RWPQAEVEALIQIRNSLESKFQEaAGPKGVLWEEISNSMASMGFQRSARRCKEKWENLHKcsTVKRTKEITREQ 497
                               8*********************9356999*****************************9833456666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.178417482IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.0E-4419483IPR009057Homeodomain-like
PfamPF138371.6E-14423484No hitNo description
CDDcd122038.09E-22423483No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MQSDYEMAGI HYQRNRNQQP QVEQQQQQQH RFIMENASTS SPFFPINYSH HYPPQQPNPL  60
LQPFTQQFFQ YQHLHYRSIL EQQQHQDIRL ELNAEGENHQ VQGVSVPFFP LSFKEDSSSK  120
GEREEDALIR GSEGYCNEAR QTSLAVSHCW QNQEDSAIKQ PFWKPLCAEF SNGNNNNSNE  180
SEKNKQEEDQ EMYPDEIHQQ QIIKSLEENE CRVVFGELEA IYATNAETNT TATTNIHRMA  240
SESVLTAEDL PINNNNNVSF PVATFNDSNQ TSGPTAIATT TAAAIDIGSE SASVGKATRE  300
DEVHNRRKRR RRAKEGTSIT MARFFESLVK KLVNHQEDLQ KKFMETIERL DQERKEREET  360
WREQELAKLE KEAAIRAQER TLASNREAAL VSYLEKLTGQ KINFQHGSEP DKSCNSLVKL  420
NNKRWPQAEV EALIQIRNSL ESKFQEAAGP KGVLWEEISN SMASMGFQRS ARRCKEKWEN  480
LHKCSTVKRT KEITREQLND GNNSIDFVIQ GNDTVDDHLG TVNLTEGNKG NSEKDKHGNG  540
ENKNGNWKEE MEEIKEGDI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305311RRKRRRR
2306310RKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782860.10.0PREDICTED: trihelix transcription factor GT-2-like
TrEMBLA0A1U7X8T00.0A0A1U7X8T0_NICSY; trihelix transcription factor GT-2-like
STRINGXP_009782860.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11622911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.27e-30Trihelix family protein