PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00352g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 380aa MW: 42310.8 Da PI: 6.8516 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125 | 2.4e-39 | 109 | 169 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k ++cprC+s++tkfCyynny+++qPryfCk+C+ryWt+GG++rnvPvG+grrknk+ss Niben101Scf00352g00001.1 109 PDKLVPCPRCNSMETKFCYYNNYNVNQPRYFCKNCQRYWTAGGTMRNVPVGSGRRKNKSSS 169 78999*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-30 | 98 | 166 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.2E-32 | 111 | 167 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.463 | 113 | 167 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 115 | 151 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MSEVREPEIK LFGQTIGLTQ ERGLWNRKSS SYSTSIASNE DKITSKGEFT QSKQENELVD 60 PTVDSLVEPE TSSGISDELK IHDADKETLS PKSVEEEDSS DQEKTLKKPD KLVPCPRCNS 120 METKFCYYNN YNVNQPRYFC KNCQRYWTAG GTMRNVPVGS GRRKNKSSST SNYGMHLPAL 180 RANGTVLTFG SDEPLCDSMV GNDQSNGVCS TSSVLTEKEN NSSTHDLKIF QAFHPQVPYF 240 QGAPWPYSGF PVSFYPAQPY WGCTVASPWN VPWLSSDQSA HNTGPSSPTL GKHSRENEGE 300 RCVLIPKTLR VDDPNEAAKS SIWSTLGIKN DKIDSVRGAR LFKAFNTKAD HRNRESDASF 360 VLQANPAALS RSLNFRESTQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009758869.1 | 0.0 | PREDICTED: cyclic dof factor 1-like | ||||
Refseq | XP_016516181.1 | 0.0 | PREDICTED: cyclic dof factor 1-like | ||||
Swissprot | Q93ZL5 | 8e-82 | CDF2_ARATH; Cyclic dof factor 2 | ||||
TrEMBL | A0A1S4DRW7 | 0.0 | A0A1S4DRW7_TOBAC; cyclic dof factor 1-like | ||||
TrEMBL | A0A1U7V9B3 | 0.0 | A0A1U7V9B3_NICSY; cyclic dof factor 1-like | ||||
STRING | XP_009758869.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA532 | 24 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 4e-84 | cycling DOF factor 2 |
Publications ? help Back to Top | |||
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