PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00350g04011.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ZF-HD

Protein Properties

Length: 294aa MW: 32692.5 Da PI: 8.8168

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00350g04011.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	103.7	1.2e-32	79	134	2	58
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +++rY+eClkNhAas+Gg+++DGCgEfmps ge+gt +alkCaAC+CHRnFHR+e+ Niben101Scf00350g04011.1 79 SRARYRECLKNHAASIGGNVTDGCGEFMPS-GEKGTLEALKCAACNCHRNFHRKEQP 134 5789***********************9.999******************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	7.3E-30	81	133	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	8.0E-22	82	132	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	8.9E-31	82	132	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.786	83	132	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	3.5E-29	224	287	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.74E-17	224	284	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.5E-28	226	283	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MALAGEDKEM RMQGSLGYHS LDQNIDQGNH HHHHQPNNNN LQPQQDNEKS SSGGTGAAPP 60 IVVPYSSGGS TNNKFKITSR ARYRECLKNH AASIGGNVTD GCGEFMPSGE KGTLEALKCA 120 ACNCHRNFHR KEQPNVDNNN AGIMVVHPLQ LPQPLPSPLP SMNHHHQHGH SVWSTMPPQP 180 VKMAFRGSGG DGSGATDSSS EELNFNTYQQ ATSVSPQPQP PFMLAKKRFR TKFTQDQKEK 240 MLEFAEKLGW RIPREDDTEV QRFCSQVGVK RQVFKVWMHN NKNPSAKKNP QEEP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-24	227	283	18	74	ZF-HD homeobox family protein
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.
UniProt	Putative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269\|PubMed:16428600, ECO:0000269\|PubMed:21059647, ECO:0000269\|PubMed:21779177}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269\|PubMed:21779177}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009763792.1	0.0	PREDICTED: zinc-finger homeodomain protein 5-like
Refseq	XP_016490581.1	0.0	PREDICTED: zinc-finger homeodomain protein 5-like
Swissprot	Q9FRL5	8e-59	ZHD5_ARATH; Zinc-finger homeodomain protein 5
Swissprot	Q9ZPW7	2e-59	ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBL	A0A1S4BNW1	0.0	A0A1S4BNW1_TOBAC; zinc-finger homeodomain protein 5-like
TrEMBL	A0A1U7V6K4	0.0	A0A1U7V6K4_NICSY; zinc-finger homeodomain protein 5-like
STRING	XP_009763792.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA518	24	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75240.1	4e-58	homeobox protein 33