PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00350g04009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 89aa    MW: 10261.7 Da    PI: 9.5859
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00350g04009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.83.3e-10347345
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                              +WTt   +++ +a +++ ++   +W+ Iar++g g+++++++ ++ 
  Niben101Scf00350g04009.1  3 SWTTRQNKKFEEALALFDKEtpdRWHNIARCVG-GKSAEEVRTHYE 47
                              6*****************99*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.615154IPR017884SANT domain
SMARTSM007173.8E-6152IPR001005SANT/Myb domain
PfamPF002493.6E-7347IPR001005SANT/Myb domain
CDDcd001674.41E-7350No hitNo description
SuperFamilySSF466892.26E-12358IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-4448IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MASWTTRQNK KFEEALALFD KETPDRWHNI ARCVGGKSAE EVRTHYELLV KDIMQIENGQ  60
VPLPNYKAIG SNSRGYASEQ RLLKNLKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-304891193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244969.13e-60PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1737e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1J6J2A27e-59A0A1J6J2A2_NICAT; Protein radialis-like 6
STRINGXP_009771192.14e-59(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-37RAD-like 6