PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00340g03001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 388aa    MW: 44363.2 Da    PI: 6.9032
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00340g03001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like993.3e-31204258155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               k+r+rWt+ LH+rFve+v++LGG++kAtPk+i++lm+ +gLt+ hvkSHLQkYR+
  Niben101Scf00340g03001.1 204 KTRIRWTQHLHDRFVECVNRLGGADKATPKAIVKLMDSEGLTIFHVKSHLQKYRS 258
                               68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-28202259IPR009057Homeodomain-like
SuperFamilySSF466893.76E-16203258IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-23204259IPR006447Myb domain, plants
PfamPF002491.2E-6208257IPR001005SANT/Myb domain
PfamPF143792.2E-21288335IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MSIQRAEQTH AYYNSEFATD YNLEFQQNID QQKSTSCLEF CFQRGTSAEN CCQQQQISWP  60
NTDSSPRTII SRIGSPPSAF FATDRLIQYE YQDNSCQLSK YNDPQLPSYS QRDFPKISIG  120
PEGAYGNPFS NISEKERLVL HKNKLLEEFD SSNKQSSMPV FHGNQDYGQL SNNFSGFNLV  180
HARQQSGSPS TNNVNNSGGS LSNKTRIRWT QHLHDRFVEC VNRLGGADKA TPKAIVKLMD  240
SEGLTIFHVK SHLQKYRSAK YIPESAEGKS EKIDSPNNVT QMNSKTGMQI KEALNIQLEV  300
QRRLHEQLEI QRKLQMRIEE QGKQLKKMFD EQQKTTRSLL ETRNSRITSP VDTFTPHEEE  360
DEVHVADSFD NTNFSSKISY NDMANALI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-22204261259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-22204261259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-22204261259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-22204261259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-22204261259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-22204261259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-22204261259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-22204261259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765655.10.0PREDICTED: probable transcription factor KAN3 isoform X1
TrEMBLA0A1U7VUR80.0A0A1U7VUR8_NICSY; probable transcription factor KAN3 isoform X1
STRINGXP_009765655.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24912458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.12e-67G2-like family protein