PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00337g04004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 211aa    MW: 24252.8 Da    PI: 9.8792
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00337g04004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.56.4e-32959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklye++s
  Niben101Scf00337g04004.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 59
                              79***********************************************96 PP
2K-box100.42.6e-33821748100
                     K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                               + ++ ++ + ++e+ +Lk+++e Lqr+qR+llGedL++L+ keL++Le+qL++slk+iRs+K++ +l+q+ +lq+ke++l e+nk
  Niben101Scf00337g04004.1  82 QSASDHTRNNYHEYLRLKARVELLQRSQRNLLGEDLGTLNSKELEHLEHQLDSSLKQIRSRKTQNMLDQLADLQQKEQMLAEANK 166
                               567788999**************************************************************************** PP

                     K-box  93 aLrkklee 100
                               +Lr+klee
  Niben101Scf00337g04004.1 167 QLRRKLEE 174
                               *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.9E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.585161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-34280IPR002100Transcription factor, MADS-box
CDDcd002656.35E-45279No hitNo description
PRINTSPR004044.6E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-333859IPR002100Transcription factor, MADS-box
PfamPF014863.0E-2784172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.71588178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFCST  60
SSMMQTLEKY QQCSYASLDP MQSASDHTRN NYHEYLRLKA RVELLQRSQR NLLGEDLGTL  120
NSKELEHLEH QLDSSLKQIR SRKTQNMLDQ LADLQQKEQM LAEANKQLRR KLEESAARVP  180
LRLYSTPMGG NEVNAAATAN NMNGFIPGWM L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-289317222101Developmental protein SEPALLATA 3
4ox0_B2e-289317222101Developmental protein SEPALLATA 3
4ox0_C2e-289317222101Developmental protein SEPALLATA 3
4ox0_D2e-289317222101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with EJ2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761698.11e-143PREDICTED: MADS-box protein CMB1-like
SwissprotK4DEK01e-118J2_SOLLC; MADS-box protein J2
TrEMBLA0A1U7V5N01e-142A0A1U7V5N0_NICSY; MADS-box protein CMB1-like
STRINGXP_009761698.11e-143(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.27e-90MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]