PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

AP2

Protein Properties

Length: 451aa MW: 50766.1 Da PI: 8.4574

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00321g03008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.3	5.2e-20	116	165	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r +r++lg+f tae+Aa+a+++a+ +++g Niben101Scf00321g03008.1 116 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFNTAEDAARAYDKAAIEFRG 165 59*****.******82....48**********************998 PP
2	AP2	63.3	5.2e-20	320	369	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r +r++lg+f tae+Aa+a+++a+ +++g Niben101Scf00321g03008.1 320 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFNTAEDAARAYDKAAIEFRG 369 59*****.******82....48**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	2.3E-37	116	179	IPR001471	AP2/ERF domain
Pfam	PF00847	1.2E-13	116	165	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.829	116	173	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-22	116	173	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.0E-31	116	173	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-11	117	128	IPR001471	AP2/ERF domain
CDD	cd00018	1.14E-31	117	172	No hit	No description
PRINTS	PR00367	1.6E-11	139	155	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.829	320	377	IPR001471	AP2/ERF domain
SMART	SM00380	2.3E-37	320	383	IPR001471	AP2/ERF domain
Pfam	PF00847	1.2E-13	320	369	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-22	320	377	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.0E-31	320	377	IPR001471	AP2/ERF domain
CDD	cd00018	1.14E-31	321	376	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MQRSTKKVKQ EETASINHQI SQPKFTDEQE FSIMVSALKN VITGDTTQEF QYIISSSSPS 60 TCMSSLPPLF RVPTEPEPCQ FCKIKGCLGC NYFGASVAAA VDNKKTNIIV KKKKKNYRGV 120 RQRPWGKWAA EIRDPRRAAR VWLGTFNTAE DAARAYDKAA IEFRGPRAKL NFSFADYTSI 180 QQQNATTSSQ QQEEPVQLEQ GIKTDSSTKT TKQEETVSVN HLISQPKFTD EQEFSIMVSA 240 LKNVITGHTT QEFQYIISSS SPSTCMSSLE PPLFRVPTEP EPCQFCKIIG CLGCNYFGAS 300 VAADDDNKKT NIIVKKKKKN YRGVRQRPWG KWAAEIRDPR RAARVWLGTF NTAEDAARAY 360 DKAAIEFRGP RAKLNFSFAD YTSIQQQNAT TSTTFSIFQQ QQEPVQLQQG EEEDFWDQLM 420 ASDNEIQDCL RMMDFNGESS YSGGGSIAHS F

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MQRSTKKVKQ EETASINHQI SQPKFTDEQE FSIMVSALKN VITGDTTQEF QYIISSSSPS  60
TCMSSLPPLF RVPTEPEPCQ FCKIKGCLGC NYFGASVAAA VDNKKTNIIV KKKKKNYRGV  120
RQRPWGKWAA EIRDPRRAAR VWLGTFNTAE DAARAYDKAA IEFRGPRAKL NFSFADYTSI  180
QQQNATTSSQ QQEEPVQLEQ GIKTDSSTKT TKQEETVSVN HLISQPKFTD EQEFSIMVSA  240
LKNVITGHTT QEFQYIISSS SPSTCMSSLE PPLFRVPTEP EPCQFCKIIG CLGCNYFGAS  300
VAADDDNKKT NIIVKKKKKN YRGVRQRPWG KWAAEIRDPR RAARVWLGTF NTAEDAARAY  360
DKAAIEFRGP RAKLNFSFAD YTSIQQQNAT TSTTFSIFQQ QQEPVQLQQG EEEDFWDQLM  420
ASDNEIQDCL RMMDFNGESS YSGGGSIAHS F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-23	113	376	2	62	ATERF1
3gcc_A	2e-23	113	376	2	62	ATERF1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009762423.1	1e-142	PREDICTED: ethylene-responsive transcription factor ERF109-like
Refseq	XP_016439810.1	1e-142	PREDICTED: ethylene-responsive transcription factor ERF109-like
Swissprot	Q9SZ06	4e-36	EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBL	A0A1S3XIL4	1e-140	A0A1S3XIL4_TOBAC; ethylene-responsive transcription factor ERF109-like
TrEMBL	A0A1U7V7Q0	1e-140	A0A1U7V7Q0_NICSY; ethylene-responsive transcription factor ERF109-like
STRING	XP_009762423.1	1e-141	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34410.1	7e-31	redox responsive transcription factor 1

Publications ? help Back to Top
Matsuo M,Oelmüller R REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling. Plant Signal Behav, 2015. 10(11): p. e1051279 [PMID:26479402] Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression. J Vis Exp, 2018. [PMID:26649488] Bahieldin A, et al. Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant. BMC Plant Biol., 2016. 16(1): p. 216 [PMID:27716054] Huang D,Lin W,Deng B,Ren Y,Miao Y Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis. Int J Mol Sci, 2018. [PMID:29112140] Kong X, et al. PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis. Cell Rep, 2018. 22(5): p. 1350-1363 [PMID:29386120]