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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00317g11013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 713aa MW: 78202.9 Da PI: 5.9324 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 273.4 | 7.3e-84 | 352 | 712 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 ++++++ e + +g++++aq +Larl+++ sp g+p++R+a+yf+eAL+ + ++++ ++pp+ ++ + + ++ a+k+fsev Niben101Scf00317g11013.1 352 DQIFQASELLLAGHFSNAQMILARLNQQLSPIGKPFKRAAFYFKEALQLPFLL--PRTSTSFPPRIPTPFDCVLKMDAYKAFSEV 434 57899999999*************************************99987..99999************************* PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172 sP+++f ++t NqaI ea+ ++++HiiDfdi+ G+QW +++q+L s ++++ sl+iT+++sp+++++ e+ ++e L+ fA+ l Niben101Scf00317g11013.1 435 SPLIQFMNFTSNQAIFEALGDAKEIHIIDFDIGCGAQWSSFMQELPSSNRKATSLKITAFVSPSTHHSVEIGIMHESLTLFANDL 519 ************************************************************************************* PP GRAS 173 gvpfefnvlvakrle..dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255 g++fe +v+ ++++ + l++Lr ++ Ea+a+n+ + + + +++L+++k+lsPkvvv e+ +++++ ++ + Niben101Scf00317g11013.1 520 GIRFELEVINLDSFDpkTYPLSSLRSSECEAIAINFPIWSISSC--LFA----FPSLLHCMKQLSPKVVVSLERGCERTELPLKH 598 ********9777654115678999************99555444..344....456***************************** PP GRAS 256 rflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 ++l+al+yy +l+ s+ +a+l + + k+Er ll+ +i+n+v + ++ ++ Wr+ + +aGF+p+++s+ ++ qa+ Niben101Scf00317g11013.1 599 HLLHALQYYETLLASIdAANL--TPDVGEKIERSLLQSSIENMVLGRLQS----PNRIPPWRNLFASAGFSPIAFSNLTEIQAEI 677 ****************55555..6678889**************988777....999**************************** PP GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 l++++++ g++ve+++ slvl Wk+++L+s+ +Wr Niben101Scf00317g11013.1 678 LVKRTQVGGFHVEKRQTSLVLSWKQQELLSALSWR 712 **********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.466 | 324 | 692 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.5E-81 | 352 | 712 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 713 aa Download sequence Send to blast |
MIVIPQNNNL AGAKGVLGVS SYVPSISSPE AAICNKGLNF TRNESVSVLD TRSPSPSASS 60 SSCSYGGQYA GNNGVPGAGA EKIDGRKEEL VTELQPFSFG LEPEKFNLGF GDLDNLLPEL 120 AGSDQTIFRW ISGDMEDPSV SLKQLIQGGN ANADLGCGVS VAGSFACTDN ISFSSSDISL 180 DANIEKIGSV VIDSNNRPNN NFENPNVSLL AKSLPPSLSF QEQQSEQKPQ ISCPQIMANQ 240 TQFQNSAYVN LFGSSSYNMN QEQPPPKRHN SGILGSSLGF LLPKVPFFNP SGDLLLRKQP 300 LGQIQQQVNL LPPHQFQPTP LFVPKLEAAA GGGNGNVMVP RHQQQEQQFI YDQIFQASEL 360 LLAGHFSNAQ MILARLNQQL SPIGKPFKRA AFYFKEALQL PFLLPRTSTS FPPRIPTPFD 420 CVLKMDAYKA FSEVSPLIQF MNFTSNQAIF EALGDAKEIH IIDFDIGCGA QWSSFMQELP 480 SSNRKATSLK ITAFVSPSTH HSVEIGIMHE SLTLFANDLG IRFELEVINL DSFDPKTYPL 540 SSLRSSECEA IAINFPIWSI SSCLFAFPSL LHCMKQLSPK VVVSLERGCE RTELPLKHHL 600 LHALQYYETL LASIDAANLT PDVGEKIERS LLQSSIENMV LGRLQSPNRI PPWRNLFASA 660 GFSPIAFSNL TEIQAEILVK RTQVGGFHVE KRQTSLVLSW KQQELLSALS WRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-26 | 373 | 712 | 26 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019252370.1 | 0.0 | PREDICTED: scarecrow-like protein 22 | ||||
TrEMBL | A0A1J6IGI6 | 0.0 | A0A1J6IGI6_NICAT; Scarecrow-like protein 6 | ||||
STRING | XP_009803487.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6986 | 19 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 7e-94 | GRAS family protein |