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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00317g11002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 618aa MW: 68632.6 Da PI: 6.0915 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 262.8 | 1.2e-80 | 242 | 602 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 ++++++ e + +g++++aq +Larl+++ sp g+p++R a+yf+eAL + + ++ ++pp+ ++ + + ++ a+k+fse+ Niben101Scf00317g11002.1 242 DQIFQASELLLAGQFSNAQMILARLNQQLSPIGKPFKRSAFYFKEALLLPFLL--PCTSTSFPPRIPTPFDCVLKMDAYKAFSEI 324 67899999999************************************998887..7777889***99999*************** PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172 sP+++f ++t q Ilea+ ++++HiiDfdi+ G+QW +++q+L s ++++ sl+iT+++sp+++++ e+ ++e + fA+ + Niben101Scf00317g11002.1 325 SPLIQFMNFTSYQPILEALGDSKEIHIIDFDIGCGAQWSSFMQELRSSNRKATSLKITAFVSPSTHHSVEIGIMHESVTLFANDV 409 ************************************************************************************* PP GRAS 173 gvpfefnvlvakrle..dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255 g+ fe +v+ ++++ + l++Lr ++ Ea+a+n+ + + + +++L+++k+lsPkvvv e+ +++++ ++ + Niben101Scf00317g11002.1 410 GIGFELEVINLDSFDpkTYPLSSLRSSECEAIAINFPIWSISSC--LFA----FPSLLHCMKQLSPKVVVSLERGCERTELPLKH 488 ********9777654115678999************99555444..344....456***************************** PP GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 ++l+al+yy l+ s++a + e +k+Er ll+++i+n+v + ++ ++ Wr+ + +aGF+p+++s+ a+ qa+++ Niben101Scf00317g11002.1 489 HLLHALQYYEILLASIDAA-NLTPEIGKKIERSLLQPSIENMVLGRLRS----PDQMPPWRNLFASAGFSPIEFSNMAEIQAECV 568 ****************555.34778999****************99988....999***************************** PP GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + ++++ g++ve+++ slvl+Wk+++L+s+ aWr Niben101Scf00317g11002.1 569 VMRTQVGGFHVEKRQTSLVLCWKQQKLLSILAWR 602 *********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.12 | 214 | 582 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.1E-78 | 242 | 602 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 618 aa Download sequence Send to blast |
MGEKSDLGFE DLDNLLPELA GSDQTLFRCI SGDMEDPSVS LKQLLQGGNE NADLGCGVSV 60 QSSGFEVSAA GSLAHTDNVS FSNSNLLLNA NIEKIGSVIN SDNKKNVSFE HLNVNLLARN 120 LAPALSFQEQ QSEHNSAYVN MLGSLWYDIS QEQPPPKRHN SGTLGSSLSA LLPEVPFFDS 180 SGDLLLRKQP LGQMRQQVNL LPFHQFQQKP LIVPKLEAAG GGGNGNLMVP RHQQQEQQFI 240 YDQIFQASEL LLAGQFSNAQ MILARLNQQL SPIGKPFKRS AFYFKEALLL PFLLPCTSTS 300 FPPRIPTPFD CVLKMDAYKA FSEISPLIQF MNFTSYQPIL EALGDSKEIH IIDFDIGCGA 360 QWSSFMQELR SSNRKATSLK ITAFVSPSTH HSVEIGIMHE SVTLFANDVG IGFELEVINL 420 DSFDPKTYPL SSLRSSECEA IAINFPIWSI SSCLFAFPSL LHCMKQLSPK VVVSLERGCE 480 RTELPLKHHL LHALQYYEIL LASIDAANLT PEIGKKIERS LLQPSIENMV LGRLRSPDQM 540 PPWRNLFASA GFSPIEFSNM AEIQAECVVM RTQVGGFHVE KRQTSLVLCW KQQKLLSILA 600 WRPAEDQIKR LKPHLGSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-25 | 233 | 603 | 12 | 380 | Protein SCARECROW |
5b3h_A | 2e-25 | 233 | 603 | 11 | 379 | Protein SCARECROW |
5b3h_D | 2e-25 | 233 | 603 | 11 | 379 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016437509.1 | 0.0 | PREDICTED: scarecrow-like protein 6 isoform X1 | ||||
TrEMBL | A0A1S3XCF7 | 0.0 | A0A1S3XCF7_TOBAC; scarecrow-like protein 6 isoform X1 | ||||
STRING | XP_009803484.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6986 | 19 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 1e-93 | GRAS family protein |