PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00317g05001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 321aa    MW: 35875 Da    PI: 8.7827
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00317g05001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00028181203123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               y+C++C+k+ +++  L +H   H
  Niben101Scf00317g05001.1 181 YQCGICHKMLKTSQALGSHKTIH 203
                               9******************9887 PP
2zf-C2H210.70.0016237259123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++Cp Cgk F +   L  H r+H
  Niben101Scf00317g05001.1 237 HECPFCGKFFQSGQALGGHKRSH 259
                               79**********99999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.97E-5328No hitNo description
PROSITE profilePS5015710.242431IPR007087Zinc finger, C2H2
PfamPF139123.0E-6426IPR007087Zinc finger, C2H2
SMARTSM003550.074426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.17E-9179203No hitNo description
PROSITE profilePS501578.891181208IPR007087Zinc finger, C2H2
PfamPF139120.0021181204IPR007087Zinc finger, C2H2
SMARTSM003550.39181203IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
SuperFamilySSF576671.17E-9232259No hitNo description
Gene3DG3DSA:3.30.160.609.5E-4234259IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.8E-10237260IPR007087Zinc finger, C2H2
SMARTSM003550.039237259IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.159237259IPR007087Zinc finger, C2H2
PROSITE patternPS000280239259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEKHKCKLCS RKFLNGKALG GHMRSHLMAL PLPPKTPPLK RDSVGGRSHS TLSLCSSENQ  60
EEEVLEQKDD DLLGNYGLRE NPKRSFRMID PEFLDGGYVV QDRESETESI ENPTCRRSKR  120
SKKIVVTVEK KKEKSVDFEP LSLFSDSSSE EDIAMCLMML SKDVWKSSQP SKLRPKHGKK  180
YQCGICHKML KTSQALGSHK TIHKIKNSNS STSVEESEQK PTKKLLSVKS IMDQKLHECP  240
FCGKFFQSGQ ALGGHKRSHL IMSSSTTGSS SLKLGDSFLV EYSNSAKLPS GFIDLNMPAP  300
MEDEDFSQPD FSAISDAEIP K
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016489068.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A1S4BJI00.0A0A1S4BJI0_TOBAC; zinc finger protein ZAT1-like
STRINGXP_009591197.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.12e-28C2H2-like zinc finger protein